data.real: Real data that include an OTU table, a taxonomy table, and a...

In miLineage: Association Tests for Microbial Lineages on a Taxonomic Tree

Description

The data are derived from a real gut microbiome study. The data contain an OTU table, a taxonomy table, and a covariate table. The data include 96 samples and 80 OTUs.

Usage

data("data.real")

Format

data.real contains the following objects:

• OTU.real: a matrix of OTU counts for 96 samples and 80 OTUs

• Tax.real: a matrix of taxonomy table from Rank1 (kingdom level) to Rank6 (genus level)

• covariate.real: a matrix of three variables

Source

Wu, Gary D., et al. "Linking long-term dietary patterns with gut microbial enterotypes." Science 334.6052 (2011): 105-108.

Examples

data(data.real)

miLineage documentation built on May 2, 2019, 10:50 a.m.