st_previz: Process the 'stabilitas()' output to a new format ready for...

In microSTASIS: Microbiota STability ASsessment via Iterative cluStering

Description

Process the stabilitas() output to a new format ready for the visualization functions.

Usage

st_previz(results, times)

Arguments

results	a list with the stabilitas() outputs.
times	a vector with the names of each paired time, e.g. "t1_t2".

Value

A data frame ready for its use under the visualization functions.

Examples

t1_t2 <- paired_times(data = clr[,1:25], first = "_1",
                      second = "_25", common = "_0_")
t2_t3 <- paired_times(data = clr[,1:25], first = "_25",
                      second = "_26", common = "_0_")
klist_t1_t2 <- iterative_clustering(data = t1_t2, parallel = FALSE)
klist_t2_t3 <- iterative_clustering(data = t2_t3, parallel = FALSE)
result_t1_t2 <- stabilitas(klist_t1_t2, common = "_0_")
result_t2_t3 <- stabilitas(klist_t2_t3, common = "_0_")
results <- st_previz(results = list(result_t1_t2, result_t2_t3),
                     times = c("t1_t2", "t2_t3"))

microSTASIS documentation built on Sept. 14, 2021, 9:07 a.m.