minque: An R Package for Linear Mixed Model Analyses
Version 1.1

This package offers three important components: (1) to construct a use-defined linear mixed model, (2) to employ one of linear mixed model approaches: minimum norm quadratic unbiased estimation (MINQUE) (Rao, 1971) for variance component estimation and random effect prediction; and (3) to employ a jackknife resampling technique to conduct various statistical tests. In addition, this package provides the function for model or data evaluations.This R package offers fast computations for large data sets analyses for various irregular data structures.

Browse man pages Browse package API and functions Browse package files

AuthorJixiang Wu
Date of publication2014-09-08 06:58:28
MaintainerJixiang Wu <qgtools@gmail.com>
LicenseGPL-2
Version1.1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("minque")

Man pages

brate: Cotton boll retention rate data
cot: Twenty four cotton genotypes with four agronomic traits
lmm: An R function for linear mixed model analysis.
lmm.check: An R function to obtain information from a linear mixed model
lmm.jack: An R function for linear mixed model analysis
lmm.perm: An R function for linear mixed model analysis and permutation...
lmm.simu: An R function for linear mixed model simulation.
lmm.simudata: An R function to generate a simulated data set
lmm.simu.jack: An R function for linear mixed model simulation.
maize: Maize variety trial
mq-package: An R Package for Various Linear Mixed Models Analyses
ncii: NC design II F1 data

Functions

AD2Matrix Source code
AD2Matrix2 Source code
AD2MatrixIBD Source code
AD4Matrix Source code
ADAA2Matrix Source code
ADC2Matrix Source code
ADC4Matrix Source code
ADM2Matrix Source code
BigM Source code
BigX Source code
CFactor Source code
CNumeric Source code
Comb Source code
ConVariable Source code
ConVariable1 Source code
Cor Source code
DropColumns Source code
Edata Source code
FactorLM Source code
GGE Source code
GGEMatrix Source code
GGEMatrixIBD Source code
GYLMatrix Source code
GenerateU Source code
GetConVar Source code
GetConVar1 Source code
GetConVariable Source code
GetFit Source code
GetQa Source code
GetQa.gls Source code
GetVarPre Source code
IndMatrix Source code
IndMatrix1 Source code
Intersect Source code
LargeInv Source code
MINQUE Source code
MINQUEVarLUP Source code
MINQUEVarPre Source code
MINQUE_L Source code
MINQUE_R Source code
MarkerAD4Matrix Source code
PedRecode Source code
PedSplit Source code
RCAD2Matrix Source code
REML Source code
RandJackCond Source code
SMAD2Matrix Source code
SVDInv Source code
SelectCor Source code
SimuData Source code
SimuData0 Source code
SimuData1 Source code
SimuData_Old Source code
UA2Matrix Source code
UAA2Matrix Source code
UAAE2Matrix Source code
UAE2Matrix Source code
UC2Matrix Source code
UCE2Matrix Source code
UD2Matrix Source code
UDE2Matrix Source code
Woodbury Source code
Woodbury0 Source code
ar1_r Source code
brate Man page
combid Source code
comid Source code
cot Man page
crecode Source code
crecode1 Source code
cs_r Source code
factorlmform Source code
fixed_data Source code
form Source code
generateu Source code Source code
genmod Source code
genmod.data Source code
genmod.jack Source code
genmod.jack1 Source code
genmod.jack2 Source code
genmod.mq Source code
genmod.oldperm Source code
genmod.perm Source code
genmod.reml Source code
genmod.reml.jack Source code
genmod.reml.simu Source code
genmod.simu Source code
genmod.simuold Source code
genmod0 Source code
getR Source code
getRR Source code
get_HR Source code
getglsid Source code
getglsindex Source code
getrmmat Source code
ginv Source code
gls.est Source code
gls.its Source code
gls.jack Source code
gls.mq Source code
gls.mq0 Source code
glsdata.sort Source code
lm.conversion0 Source code
lm.data Source code
lm.data0 Source code
lm.data2 Source code
lmm Man page Source code
lmm.check Man page Source code
lmm.ga Source code
lmm.gls Source code
lmm.gls.eval Source code
lmm.gls.jack Source code
lmm.jack Man page Source code
lmm.jack0 Source code
lmm.jack1 Source code
lmm.mq Source code Source code
lmm.mq.jack Source code
lmm.mq.perm Source code Source code
lmm.mq.simu Source code Source code
lmm.perm Man page Source code
lmm.reml Source code Source code
lmm.reml.jack Source code Source code
lmm.reml.perm Source code
lmm.reml.simu Source code
lmm.simu Man page Source code
lmm.simu.jack Man page Source code
lmm.simudata Man page Source code
lmm1 Source code
maize Man page
minque Man page Source code
minque-package Man page
minque.default Source code
minque.jack Source code
minque.jack1 Source code
minque.resample Source code
mixed Source code
mixed.data Source code
mixed.data1 Source code
mixed.data2 Source code
mixed.formula Source code
mixed.genmod.minque Source code
mixed.genmod.minque.jack Source code
mixed.minque Source code
mixed.minque.jack Source code
mixed.model Source code
mixed_formula Source code
model.rdata Source code
model_data Source code
mpcor Source code
mq Source code
mq.perm Source code
mq0 Source code
ncii Man page
print.Matrix Source code
print.Umatrix Source code
print.genmod.data Source code
print.minque Source code
print.minque.jack Source code
prop Source code
qg.model Source code
random_data Source code
reg.formula Source code
reml Source code
reml.perm Source code
reml0 Source code
reml1.perm Source code
rowsum Source code
simudata Source code
subinv100 Source code
subinv1000 Source code
subinv128000 Source code
subinv16000 Source code
subinv20 Source code
subinv200 Source code
subinv2000 Source code
subinv32000 Source code
subinv4000 Source code
subinv50 Source code
subinv500 Source code
subinv64000 Source code
subinv8000 Source code
svdinv Source code
svdinv0 Source code
svdwrapper Source code
un_v Source code
vectcomp Source code

Files

NAMESPACE
data
data/brate.rda
data/cot.rda
data/maize.rda
data/ncii.rda
R
R/lmm.mq.perm.R
R/Umatrix.R
R/lmm.reml.jack.R
R/minquefunction4.r
R/lmm.mq.jack.R
R/lmm.mq.R
R/generateu.R
R/remlfunctions.R
R/lmm.mq.simu.R
R/lmm.reml.R
MD5
DESCRIPTION
man
man/cot.Rd
man/lmm.perm.Rd
man/mq-package.Rd
man/brate.Rd
man/lmm.check.Rd
man/lmm.Rd
man/maize.Rd
man/lmm.simudata.Rd
man/lmm.simu.Rd
man/ncii.Rd
man/lmm.simu.jack.Rd
man/lmm.jack.Rd
minque documentation built on May 19, 2017, 1:40 p.m.