mq-package: Various Linear Mixed Model Analyses
In minque: Various Linear Mixed Model Analyses
Description
Details
Author(s)
References
Description
This package offers three important components: (1) to construct a use-defined linear mixed model, (2) to employ one of linear mixed model approaches: minimum norm quadratic unbiased estimation (MINQUE) (Rao, 1971) for variance component estimation and random effect prediction;(3) to employ a jackknife resampling technique to conduct various statistical tests; and (4) to conduct various model evaluations. This R package offers fast computations for large data sets analyses for various irregular data structures.
Details
Package: minque
Type: Package
Version: 2.0
Date: 2019-12-18
License: GPL-3
An overview of how to use the package, including the most important functions
Author(s)
Jixiang Wu, Associate Professor of Quantitative Genetics/Biostatistics,
\Jixiang Wu <jixiang.wu@sdstate.edu>
References
Miller, R. G. 1974. The jackknife - a review. Biometrika, 61:1- 15.
Patterson, H. D. and Thompson, R. 1971. Recovery of inter-block information when block sizes are unequal. Biometrika, 58: 545-554.
Rao, C.R. 1971. Estimation of variance and covariance components-MINQUE theory. J Multiva Ana 1:19
Rao, C. R. and Kleffe, J. 1980. Estimation of variance components. In Handbook of Statistics. Vol. l: 1-40. Krishnaiah, P. R. ed. New York. North-Holland.
Searle, S. R., Casella, G. and McCulloch, C. E. 1992. Variance Components. John Wiley & Sons, Inc. New York.
Wu J (2012) GenMod: An R package for various agricultural data analyses. ASA, CSSA, and SSSA 2012 International Annual Meetings, Cincinnati, OH, p 127
Wu J., Bondalapati K., Glover K., Berzonsky W., Jenkins J.N., McCarty J.C. 2013. Genetic analysis without replications: model evaluation and application in spring wheat. Euphytica. 190:447-458
Zhu J. 1989. Estimation of Genetic Variance Components in the General Mixed Model. Ph.D. Dissertation, NC State University, Raleigh, U.S.A
Zhu J. 1993. Methods of predicting genotype value and heterosis for offspring of hybrids. (Chinese). Journal of Biomathematics, 8(1): 32-44
minque documentation built on Jan. 11, 2020, 9:18 a.m.
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Description Details Author(s) References
Description
This package offers three important components: (1) to construct a use-defined linear mixed model, (2) to employ one of linear mixed model approaches: minimum norm quadratic unbiased estimation (MINQUE) (Rao, 1971) for variance component estimation and random effect prediction;(3) to employ a jackknife resampling technique to conduct various statistical tests; and (4) to conduct various model evaluations. This R package offers fast computations for large data sets analyses for various irregular data structures.
Details
| Package: | minque |
| Type: | Package |
| Version: | 2.0 |
| Date: | 2019-12-18 |
| License: | GPL-3 |
An overview of how to use the package, including the most important functions
Author(s)
Jixiang Wu, Associate Professor of Quantitative Genetics/Biostatistics, \Jixiang Wu <jixiang.wu@sdstate.edu>
References
Miller, R. G. 1974. The jackknife - a review. Biometrika, 61:1- 15.
Patterson, H. D. and Thompson, R. 1971. Recovery of inter-block information when block sizes are unequal. Biometrika, 58: 545-554.
Rao, C.R. 1971. Estimation of variance and covariance components-MINQUE theory. J Multiva Ana 1:19
Rao, C. R. and Kleffe, J. 1980. Estimation of variance components. In Handbook of Statistics. Vol. l: 1-40. Krishnaiah, P. R. ed. New York. North-Holland.
Searle, S. R., Casella, G. and McCulloch, C. E. 1992. Variance Components. John Wiley & Sons, Inc. New York.
Wu J (2012) GenMod: An R package for various agricultural data analyses. ASA, CSSA, and SSSA 2012 International Annual Meetings, Cincinnati, OH, p 127
Wu J., Bondalapati K., Glover K., Berzonsky W., Jenkins J.N., McCarty J.C. 2013. Genetic analysis without replications: model evaluation and application in spring wheat. Euphytica. 190:447-458
Zhu J. 1989. Estimation of Genetic Variance Components in the General Mixed Model. Ph.D. Dissertation, NC State University, Raleigh, U.S.A
Zhu J. 1993. Methods of predicting genotype value and heterosis for offspring of hybrids. (Chinese). Journal of Biomathematics, 8(1): 32-44
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