gdataset.save: Save a dataset

In misha: Toolkit for Analysis of Genomic Data

Save a dataset

Description

Creates a new dataset directory containing selected tracks and/or intervals from the working database.

Usage

gdataset.save(
  path,
  description,
  tracks = NULL,
  intervals = NULL,
  symlinks = FALSE,
  copy_seq = FALSE
)

Arguments

path	Destination directory (must not exist)
description	Required description for metadata
tracks	Character vector of track names to include
intervals	Character vector of interval set names to include
symlinks	If TRUE, create symlinks to tracks/intervals instead of copying
copy_seq	If TRUE, copy seq/ directory instead of symlinking

Value

Invisible path

See Also

gdataset.load, gdataset.info

Examples

gdb.init_examples()
example_intervs <- gintervals(1, 0, 10000)
gintervals.save("example_dataset_intervals", example_intervs)
gtrack.create(
    "example_dataset_track",
    "Example dataset track",
    "dense_track",
    iterator = "example_dataset_intervals"
)
dataset_path <- tempfile("misha_dataset_")
gdataset.save(
    path = dataset_path,
    description = "Example dataset",
    tracks = "example_dataset_track",
    intervals = "example_dataset_intervals"
)
gtrack.rm("example_dataset_track", force = TRUE)
gintervals.rm("example_dataset_intervals", force = TRUE)

misha documentation built on Jan. 28, 2026, 1:07 a.m.