The misha
package is a toolkit for analysis of genomic data. it
implements an efficient data structure for storing genomic data, and
provides a set of functions for data extraction, manipulation and
analysis.
You can install the released version of misha from CRAN with:
install.packages("misha")
And the development version from GitHub with:
remotes::install_github("tanaylab/misha")
See the Genomes vignette for instructions on how to create a misha database for common genomes.
See the user manual for more usage details.
Starting in misha
4.2.0, the package no longer stores global variables
such as ALLGENOME
or GROOT
. Instead, these variables are stored in a
special environment called .misha
. This means that scripts written for
older versions of misha
will no longer work. To run such scripts,
either add a prefix of .misha$
to all those variables
(.misha$ALLGENOME
instead of ALLGENOME
), or run the following
command before running the script:
ALLGENOME <<- .misha$ALLGENOME
GROOT <<- .misha$GROOT
ALLGENOME <<- .misha$ALLGENOME
GINTERVID <<- .misha$GINTERVID
GITERATOR.INTERVALS <<- .misha$GITERATOR.INTERVALS
GROOT <<- .misha$GROOT
GWD <<- .misha$GWD
GTRACKS <<- .misha$GTRACKS
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