gintervals.ls: Returns a list of named intervals sets

In misha: Toolkit for Analysis of Genomic Data

Returns a list of named intervals sets

Description

Returns a list of named intervals sets in Genomic Database.

Usage

gintervals.ls(
  pattern = "",
  db = NULL,
  ignore.case = FALSE,
  perl = FALSE,
  fixed = FALSE,
  useBytes = FALSE
)

Arguments

pattern, ignore.case, perl, fixed, useBytes	see 'grep'
db	optional database path to filter intervals. If specified, only interval sets from that database are returned.

Details

This function returns a list of named intervals sets that match the pattern (see 'grep'). If called without any arguments all named intervals sets are returned.

When multiple databases are connected, the 'db' parameter can be used to filter intervals to only those from a specific database.

Value

An array that contains the names of intervals sets.

See Also

grep, gintervals.exists, gintervals.load, gintervals.save, gintervals.rm, gintervals, gintervals.2d, gintervals.dataset

Examples

gdb.init_examples()
gintervals.ls()
gintervals.ls(pattern = "annot*")

misha documentation built on Jan. 28, 2026, 1:07 a.m.