gintervals.load: Loads a named intervals set

In misha: Toolkit for Analysis of Genomic Data

Loads a named intervals set

Description

Loads a named intervals set.

Usage

gintervals.load(
  intervals.set = NULL,
  chrom = NULL,
  chrom1 = NULL,
  chrom2 = NULL
)

Arguments

intervals.set	name of an intervals set
chrom	chromosome for 1D intervals set
chrom1	first chromosome for 2D intervals set
chrom2	second chromosome for 2D intervals set

Details

This function loads and returns intervals stored in a named intervals set.

If intervals set contains 1D intervals and 'chrom' is not 'NULL' only the intervals of the given chromosome are returned.

Likewise if intervals set contains 2D intervals and 'chrom1', 'chrom2' are not 'NULL' only the intervals of the given pair of chromosomes are returned.

For big intervals sets 'chrom' parameter (1D case) / 'chrom1', 'chrom2' parameters (2D case) must be specified. In other words: big intervals sets can be loaded only by chromosome or chromosome pair.

Value

A data frame representing the intervals.

See Also

gintervals.save, gintervals.is.bigset, gintervals.exists, gintervals.ls, gintervals, gintervals.2d

Examples

gdb.init_examples()
gintervals.load("annotations")

misha documentation built on Sept. 14, 2023, 5:08 p.m.