gintervals.normalize: Normalize intervals to a fixed size

In misha: Toolkit for Analysis of Genomic Data

Normalize intervals to a fixed size

Description

This function normalizes intervals by computing their centers and then expanding them to a fixed size, while ensuring they don't cross chromosome boundaries.

Usage

gintervals.normalize(intervals = NULL, size = NULL, intervals.set.out = NULL)

Arguments

intervals	intervals set
size	target size for normalized intervals (must be positive integer)
intervals.set.out	intervals set name where the function result is saved. If NULL, the result is returned to the user.

Value

Normalized intervals set with fixed size, or NULL if result is saved to intervals.set.out

See Also

gintervals.force_range

Examples

gdb.init_examples()
intervs <- gintervals(1, c(1000, 5000), c(2000, 6000))
gintervals.normalize(intervs, 500)

misha documentation built on Dec. 14, 2025, 9:06 a.m.