misha-package: Toolkit for analysis of genomic data

In misha: Toolkit for Analysis of Genomic Data

Toolkit for analysis of genomic data

Description

'misha' package is intended to help users to efficiently analyze genomic data achieved from various experiments.

Details

For a complete list of help resources, use library(help = "misha").

The following options are available for the package. Use 'options' function to alter the value of the options.

NAME	DEFAULT	DESCRIPTION
gmax.data.size	10000000	Maximal number of data (intervals, ...) in large data sets stored
		in memory. Prevents excessive memory usage by various functions
		such as 'gextract', 'gscreen', etc.
gbig.intervals.size	1000000	Minimal number of intervals in a big intervals set format
gmax.mem.usage	10000000	Maximal memory consumption of all child processes in KB before the limiting algorithm is invoked.
gmax.processes	16	Maximal number of processes for multitasking
gmax.processes2core	2	Maximal number of processes per CPU core for multitasking
gmin.scope4process	10000	Minimal scope range (for 2D: surface) assigned to a
		process in multitasking mode.
gbuf.size	1000	Size of track expression values buffer.
gtrack.chunk.size	100000	Chunk size in bytes of a 2D track. If '0' chunk size is unlimited.
gtrack.num.chunks	0	Maximal number of 2D track chunks simultaneously stored in
		memory.

More information about the options can be found in 'User manual' of the package.

Author(s)

Maintainer: Aviezer Lifshitz [e-mail]

Authors:

• Misha Hoichman [e-mail]

• Eitan Yaffe [e-mail]

• Amos Tanay [e-mail]

Other contributors:

• Weizmann Institute of Science [copyright holder]

See Also

Useful links:

• https://tanaylab.github.io/misha/

• https://github.com/tanaylab/misha

• Report bugs at https://github.com/tanaylab/misha/issues

misha documentation built on Aug. 25, 2025, 9:50 a.m.