gintervals.intersect: Calculates an intersection of two sets of intervals

In misha: Toolkit for Analysis of Genomic Data

Calculates an intersection of two sets of intervals

Description

Calculates an intersection of two sets of intervals.

Usage

gintervals.intersect(
  intervals1 = NULL,
  intervals2 = NULL,
  intervals.set.out = NULL
)

Arguments

intervals1, intervals2	set of intervals
intervals.set.out	intervals set name where the function result is optionally outputted

Details

This function returns intervals that represent a genomic space which is achieved by intersection of 'intervals1' and 'intervals2'.

If 'intervals.set.out' is not 'NULL' the result is saved as an intervals set. Use this parameter if the result size exceeds the limits of the physical memory.

Value

If 'intervals.set.out' is 'NULL' a data frame representing the intersection of intervals.

See Also

gintervals.2d.band_intersect, gintervals.diff, gintervals.union, gintervals, gintervals.2d

Examples

gdb.init_examples()

intervs1 <- gscreen("dense_track > 0.15")
intervs2 <- gscreen("dense_track < 0.2")

## 'intervs3' and 'intervs4' are identical
intervs3 <- gintervals.intersect(intervs1, intervs2)
intervs4 <- gscreen("dense_track > 0.15 & dense_track < 0.2")

misha documentation built on Sept. 14, 2023, 5:08 p.m.