Man pages for mixIndependR
Genetics and Independence Testing of Mixed Genetic Panels
| AlleleFreq | Calculate Allele Frequency |
| AlleleShare | Calculate numbers of sharing alleles each pair at each locus |
| ComposPare_K | Generate Comparison Observed and Expected No. of Heterozygous... |
| ComposPare_X | Generate Comparison Observed and Expected No. of Shared... |
| counta | Simple count including zero### |
| DistAlleleShare | Build Expected Distribution of Numbers of Shared Alleles |
| DistHetero | Build Expected Distribution of Numbers of Heterozygous Loci |
| Dist_SimuChisq | Build a simulated distribution for Chi-Square |
| ExpProAlleleShare | Calculate the Expected Probability of 0,1 and 2 Shared... |
| FreqAlleleShare | Build Observed Distribution of No. of Shared Alleles |
| FreqHetero | Build Observed Distribution of No. of Heterozygous loci |
| GenotypeFreq | Calculate Genotype Frequency### |
| Heterozygous | Test heterozygosity at each locus |
| HWE.Chisq | Test the Hardy Weinberg Equilibrium with Chi-square test#### |
| mixexample | Genotype Data from A Selected Mix Panel |
| mixIndependK | Quick pvalue of total number of heterozygous loci |
| mixIndependX | Quick pvalue of total number of shared alleles |
| read_vcf_gt | Import genotype data from vcf files/ |
| RealProAlleleShare | Calculate the Real Probability of 0,1 and 2 Shared Alleles### |
| RxpHetero | Calculate Real or Expected Average Heterozygosity at each... |
| Simulate_DistK | Generate a Bundle of Simulated distributions for No. of... |
| Simulate_DistX | Build a simulated distribution for No. of Shared Alleles |
| splitGenotype | Split Genotype Table to Duo-Allele Table |
