mixexample: Genotype Data from A Selected Mix Panel

In mixIndependR: Genetics and Independence Testing of Mixed Genetic Panels

Description

This dataset is the phased genotypes for a mix panel with 100 variants. These variants are selected from the reference haplotype data of Gymrek's lab (see Reference). This is a sample with 2504 individuals.

Usage

data(mixexample)

Format

A dataframe with 2504 observations on 100 variables. This dataframe is the phased genotype files for 100 variants (including SNPs and STRs) for 2504 individuals.

Source

1000 Genomes SNP-STR Haplotype Panel <https://gymreklab.com/2018/03/05/snpstr_imputation.html> The genotypes of panel after selection <https://github.com/ice4prince/mixIndependR/tree/main/data>

References

Saini et al. (2018). A reference haplotype panel for genome-wide imputation of short tandem repeats. Nat Commun 9(1): 4397. <https://pubmed.ncbi.nlm.nih.gov/30353011/>

Examples

data(mixexample)

mixIndependR documentation built on March 17, 2021, 5:09 p.m.