mixIndependK: Quick pvalue of total number of heterozygous loci

In mixIndependR: Genetics and Independence Testing of Mixed Genetic Panels

Description

Quick pvalue of total number of heterozygous loci

Usage

mixIndependK(x,sep,t,B)

Arguments

x	a dataset of alleles. Each row denotes each individual.One allele in one cell.In the (2r-1)th column, there is the same locus with the 2r-th column; noted: no column for ID, make row.names=1 when importing.
sep	allele separator in the imported genotype data. Note: when using the special character like "|", remember to protect it as "\|".
t	times of simulation in "Simulate_DistK" and "Simulate_DistX".
B	times of bootstrapping in Chi Squares Test.

Details

This function is a summary of pipeline for number of heterozygous loci (K), and generates the p-value of K for the target dataset.

Value

pvalue (1-cumulative probabilities) for the number of heterozygous loci(K)

Examples

x <- data.frame(SNP1=c("A|A","T|T","A|T","A|T"),
                STR1=c("12|12","13|14","13|13","14|15"))
mixIndependK(x,sep ="\\|",10,10)

mixIndependR documentation built on March 17, 2021, 5:09 p.m.