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mixtree: A Statistical Framework for Comparing Sets of Trees
Statistical framework for comparing sets of trees using hypothesis testing methods. Designed for transmission trees, phylogenetic trees, and directed acyclic graphs (DAGs), the package implements chi-squared tests to compare edge frequencies between sets and PERMANOVA to analyse topological dissimilarities with customisable distance metrics, following Anderson (2001) <doi:10.1111/j.1442-9993.2001.01070.pp.x>.
Package details |
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| Author | Cyril Geismar [aut, cre, cph] (<https://orcid.org/0000-0002-8486-5890>) |
| Maintainer | Cyril Geismar <c.geismar21@imperial.ac.uk> |
| License | MIT + file LICENSE |
| Version | 0.0.1 |
| URL | https://cygei.github.io/mixtree/ |
| Package repository | View on CRAN |
| Installation |
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