kendall: Compute the Kendall distance matrix
In mixtree: A Statistical Framework for Comparing Sets of Trees
kendall R Documentation
Compute the Kendall distance matrix
Description
Kendall's distance measures the depth of the most recent common infector (MRCI) for each pair of nodes with respect to the source (patient 0).
Usage
kendall(tree)
Arguments
tree
A data frame representing a transmission tree, with the first column containing the infector IDs and the second the infectee IDs.
Value
A square, symmetric matrix of Kendall's distances between nodes.
References
A Metric to Compare Transmission Trees - M Kendall ยท 2018
See Also
findMRCIs
Examples
tree <- data.frame(from = c(1, 1, 2, 2, 3, 3), to = c(2, 3, 4, 5, 6, 7))
kendall(tree)
mixtree documentation built on April 3, 2025, 8:01 p.m.
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| kendall | R Documentation |
Compute the Kendall distance matrix
Description
Kendall's distance measures the depth of the most recent common infector (MRCI) for each pair of nodes with respect to the source (patient 0).
Usage
kendall(tree)
Arguments
tree |
A data frame representing a transmission tree, with the first column containing the infector IDs and the second the infectee IDs. |
Value
A square, symmetric matrix of Kendall's distances between nodes.
References
A Metric to Compare Transmission Trees - M Kendall ยท 2018
See Also
findMRCIs
Examples
tree <- data.frame(from = c(1, 1, 2, 2, 3, 3), to = c(2, 3, 4, 5, 6, 7))
kendall(tree)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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