abouheif: Compute the Abouheif distance matrix
In mixtree: A Statistical Framework for Comparing Sets of Trees
abouheif R Documentation
Compute the Abouheif distance matrix
Description
The Abouheif distance is the product of the number of direct descendants of each node in the path between two nodes.
It is a measure of the number of transmission events between two nodes.
Usage
abouheif(tree)
Arguments
tree
A data frame representing a transmission tree, with the first column containing the infector IDs and the second the infectee IDs.
Value
A square, symmetric matrix of Abouheif distances between nodes.
Examples
tree <- data.frame(from = c(1, 1, 2, 2, 3, 3), to = c(2, 3, 4, 5, 6, 7))
abouheif(tree)
mixtree documentation built on April 3, 2025, 8:01 p.m.
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| abouheif | R Documentation |
Compute the Abouheif distance matrix
Description
The Abouheif distance is the product of the number of direct descendants of each node in the path between two nodes. It is a measure of the number of transmission events between two nodes.
Usage
abouheif(tree)
Arguments
tree |
A data frame representing a transmission tree, with the first column containing the infector IDs and the second the infectee IDs. |
Value
A square, symmetric matrix of Abouheif distances between nodes.
Examples
tree <- data.frame(from = c(1, 1, 2, 2, 3, 3), to = c(2, 3, 4, 5, 6, 7))
abouheif(tree)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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