validate_tree: Validate a Transmission Tree

In mixtree: A Statistical Framework for Comparing Sets of Trees

Validate a Transmission Tree

Description

Checks if a transmission tree meets specific topology criteria for our test. The tree must be a directed acyclic graph (DAG), weakly connected, and have at most one infector per node.

Usage

validate_tree(tree)

Arguments

tree	A data frame with columns from and to representing the transmission tree.

Value

Invisible TRUE if the tree is valid. Throws an error if invalid.

Examples

good_tree <- data.frame(from = c(1, 2, 3), to = c(2, 3, 4))
validate_tree(good_tree)
bad_tree <- data.frame(from = c(1, 2, 3), to = c(2, 3, 2))
try(validate_tree(bad_tree))

mixtree documentation built on April 3, 2025, 8:01 p.m.