Files in mkin
Kinetic Evaluation of Chemical Degradation Data
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
R/plot.mmkin.R
R/mkinerrplot.R
R/nafta.R
R/mmkin.R
R/mkinerrmin.R
R/mkinfit.R
R/llhist.R
R/summary.nlme.mmkin.R
R/summary.mkinfit.R
R/mkinds.R
R/nlme.mmkin.R
R/confint.mkinfit.R
R/mkinparplot.R
R/illparms.R
R/status.R
R/mean_degparms.R
R/plot.mixed.mmkin.R
R/summary.saem.mmkin.R
R/multistart.R
R/summary.mmkin.R
R/mkinresplot.R
R/AIC.mmkin.R
R/mhmkin.R
R/summary_listing.R
R/parent_solutions.R
R/add_err.R
R/transform_odeparms.R
R/mkinsub.R
R/loftest.R
R/logLik.mkinfit.R
R/mkinmod.R
R/update.mkinfit.R
R/saem.R
R/dimethenamid_2018.R
R/set_nd_nq.R
R/lrtest.mkinfit.R
R/nobs.mkinfit.R
R/intervals.R
R/ilr.R
R/create_deg_func.R
R/parms.R
R/nlme.R
R/D24_2014.R
R/mkin_long_to_wide.R
R/CAKE_export.R
R/read_spreadsheet.R
R/mixed.mmkin.R
R/aw.R
R/sigma_twocomp.R
R/endpoints.R
R/parplot.R
R/mkin_wide_to_long.R
R/focus_soil_moisture.R
R/max_twa_parent.R
R/anova.saem.mmkin.R
R/ds_mixed.R
R/f_time_norm_focus.R
R/plot.mkinfit.R
R/residuals.mkinfit.R
R/hierarchical_kinetics.R
R/mkinpredict.R
inst/WORDLIST
inst/doc/twa.html
inst/doc/FOCUS_D.R
inst/doc/mesotrione_parent_2023_prebuilt.pdf
inst/doc/FOCUS_D.rmd
inst/doc/dmta_parent_2022_prebuilt.pdf
inst/doc/FOCUS_L.rmd
inst/doc/FOCUS_L.R
inst/doc/dmta_pathway_2022_prebuilt.rnw
inst/doc/dmta_parent_2022_prebuilt.rnw
inst/doc/mkin.R
inst/doc/mkin.html
inst/doc/FOCUS_L.html
inst/doc/twa.rmd
inst/doc/FOCUS_D.html
inst/doc/mesotrione_parent_2023_prebuilt.rnw
inst/doc/dmta_pathway_2022_prebuilt.pdf
inst/doc/mkin.rmd
inst/rmarkdown/templates/hierarchical_kinetics/template.yaml
inst/rmarkdown/templates/hierarchical_kinetics/skeleton/header.tex
inst/rmarkdown/templates/hierarchical_kinetics/skeleton/skeleton.Rmd
inst/testdata/lambda-cyhalothrin_soil_efsa_2014.xlsx
inst/testdata/cyantraniliprole_soil_efsa_2014.xlsx
inst/testdata/mesotrione_soil_efsa_2016.xlsx
inst/testdata/fit_old_FOCUS_D.rda
inst/dataset_generation/dimethenamid_2018.R
inst/dataset_generation/D24_2014.R
inst/dataset_generation/focus_soil_moisture.R
inst/dataset_generation/ds_mixed.R
build/vignette.rds
build/partial.rdb
tests/testthat.R
tests/testthat/summary_DFOP_FOCUS_D_eigen.txt
tests/testthat/test_aw.R
tests/testthat/experimental_data_for_UBA_2019_mkindsg.txt
tests/testthat/test_summary_old_objects.R
tests/testthat/test_residuals.R
tests/testthat/print_fits_synth_const.txt
tests/testthat/test_mhmkin.R
tests/testthat/print_mmkin_parent.txt
tests/testthat/print_multistart_dfop_sfo.txt
tests/testthat/print_dfop_nlme_1.txt
tests/testthat/test_f_time_norm.R
tests/testthat/test_mkinpredict_SFO_SFO.R
tests/testthat/test_FOCUS_D_UBA_expertise.R
tests/testthat/FOCUS_2006_C_mkinds.txt
tests/testthat/test_compiled_symbols.R
tests/testthat/NAFTA_SOP_Appendix_D.txt
tests/testthat/test_CAKE_export.R
tests/testthat/print_dfop_saem_1.txt
tests/testthat/test_FOCUS_chi2_error_level.R
tests/testthat/test_mkinmod.R
tests/testthat/test_summary.R
tests/testthat/test_saemix_parent.R
tests/testthat/test_error_models.R
tests/testthat/test_mkinds.R
tests/testthat/test_from_max_mean.R
tests/testthat/test_mkinfit.R
tests/testthat/FOCUS_2006_D.rds
tests/testthat/test_plot.R
tests/testthat/SFO_SFO_printed.txt
tests/testthat/summary_saem_dfop_sfo_s.txt
tests/testthat/test_SFORB.R
tests/testthat/summary_parent_FOCUS_2006.txt
tests/testthat/test_nlme.R
tests/testthat/test_set_nd.R
tests/testthat/dimethenamid_2018.txt
tests/testthat/test_nafta.R
tests/testthat/print_mmkin_sfo_1_mixed.txt
tests/testthat/test_schaefer07_complex_case.R
tests/testthat/print_hfits_synth.txt
tests/testthat/summary_dfop_nlme_1.txt
tests/testthat/test_confidence.R
tests/testthat/print_mmkin_sfo_sfo_dmta.txt
tests/testthat/AIC_exp_d_3.out
tests/testthat/summary_hfit_sfo_tc.txt
tests/testthat/illparms_hfits_synth.txt
tests/testthat/test_twa.R
tests/testthat/test_mkinfit_errors.R
tests/testthat/NAFTA_SOP_Appendix_B.txt
tests/testthat/test_multistart.R
tests/testthat/test_analytical.R
tests/testthat/summary_DFOP_FOCUS_D_deSolve.txt
tests/testthat/test_AIC.R
tests/testthat/test_tests.R
tests/testthat/print_nlmixr_saem_biphasic.txt
tests/testthat/test_logistic.R
tests/testthat/FOCUS_2006_D.csf
tests/testthat/summary_DFOP_FOCUS_C.txt
tests/testthat/test_synthetic_data_for_UBA_2014.R
tests/testthat/test_mixed.R
tests/testthat/anova_sfo_saem.txt
tests/testthat/setup_script.R
tests/testthat/print_sfo_saem_1_reduced.txt
tests/testthat/test_dmta.R
tests/testthat/_snaps/plot/plot-errmod-with-focus-d-obs-eigen.svg
tests/testthat/_snaps/plot/mkinerrplot-for-focus-c-sfo.svg
tests/testthat/_snaps/plot/plot-errmod-with-focus-c-tc.svg
tests/testthat/_snaps/plot/plot-res-for-focus-c.svg
tests/testthat/_snaps/plot/plot-res-for-focus-d.svg
tests/testthat/_snaps/plot/mmkin-plot-for-focus-c.svg
tests/testthat/_snaps/plot/mkinfit-plot-for-focus-c-with-sep-true.svg
tests/testthat/_snaps/plot/mmkin-plot-for-sfo-focus-c-and-d.svg
tests/testthat/_snaps/plot/plot-err-for-focus-d.svg
tests/testthat/_snaps/plot/mkinfit-plot-for-focus-c-with-defaults.svg
tests/testthat/_snaps/plot/mixed-model-fit-for-saem-object-with-saemix-transformations.svg
tests/testthat/_snaps/plot/mixed-model-fit-for-mmkin-object.svg
tests/testthat/_snaps/plot/mixed-model-fit-for-nlme-object.svg
tests/testthat/_snaps/plot/mkinparplot-for-focus-c-sfo.svg
tests/testthat/_snaps/plot/mkinfit-plot-for-focus-c-with-residuals-like-in-gmkin.svg
tests/testthat/_snaps/multistart/parplot-for-sfo-fit.svg
tests/testthat/_snaps/multistart/llhist-for-dfop-sfo-fit.svg
tests/testthat/_snaps/multistart/parplot-for-dfop-sfo-fit.svg
tests/testthat/_snaps/multistart/mixed-model-fit-for-saem-object-with-mkin-transformations.svg
tests/testthat/_snaps/multistart/llhist-for-sfo-fit.svg
tests/testthat/_snaps/nafta/plot-nafta-analysis.svg
tests/testthat/_snaps/nafta/nafta-sop-appendix-b.svg
tests/testthat/slow/test_roundtrip_error_parameters.R
tests/testthat/slow/test_parent_only.R
vignettes/FOCUS_D.rmd
vignettes/FOCUS_L.rmd
vignettes/dmta_pathway_2022_prebuilt.rnw
vignettes/references.bib
vignettes/dmta_parent_2022_prebuilt.rnw
vignettes/twa.rmd
vignettes/mesotrione_parent_2023_prebuilt.rnw
vignettes/mkin.rmd
vignettes/mkin_vignettes.css
vignettes/prebuilt/2022_cyan_pathway.pdf
vignettes/prebuilt/2022_dmta_parent.pdf
vignettes/prebuilt/2023_mesotrione_parent.pdf
vignettes/prebuilt/references.bib
vignettes/prebuilt/2023_mesotrione_parent.rmd
vignettes/prebuilt/2022_dmta_pathway.pdf
vignettes/prebuilt/2022_dmta_pathway.rmd
vignettes/prebuilt/2022_cyan_pathway.rmd
vignettes/prebuilt/2022_dmta_parent.rmd
data/FOCUS_2006_DFOP_ref_A_to_B.rda
data/ds_mixed.rda
data/mccall81_245T.RData
data/FOCUS_2006_FOMC_ref_A_to_F.rda
data/test_data_from_UBA_2014.rda
data/FOCUS_2006_SFO_ref_A_to_F.rda
data/NAFTA_SOP_2015.rda
data/schaefer07_complex_case.RData
data/experimental_data_for_UBA_2019.rda
data/NAFTA_SOP_Attachment.rda
data/FOCUS_2006_datasets.RData
data/FOCUS_2006_HS_ref_A_to_F.rda
data/focus_soil_moisture.rda
data/synthetic_data_for_UBA_2014.rda
data/D24_2014.rda
data/dimethenamid_2018.rda
man/anova.saem.mmkin.Rd
man/logLik.mkinfit.Rd
man/IORE.solution.Rd
man/mkin_wide_to_long.Rd
man/summary.nlme.mmkin.Rd
man/nlme.mmkin.Rd
man/experimental_data_for_UBA.Rd
man/hierarchical_kinetics.Rd
man/DFOP.solution.Rd
man/plot.mixed.mmkin.Rd
man/get_deg_func.Rd
man/FOCUS_2006_datasets.Rd
man/mkinplot.Rd
man/reexports.Rd
man/NAFTA_SOP_Attachment.Rd
man/mean_degparms.Rd
man/mkinerrmin.Rd
man/ilr.Rd
man/D24_2014.Rd
man/nlme.Rd
man/nafta.Rd
man/test_data_from_UBA_2014.Rd
man/mkinparplot.Rd
man/CAKE_export.Rd
man/aw.Rd
man/nobs.mkinfit.Rd
man/SFO.solution.Rd
man/loftest.Rd
man/add_err.Rd
man/FOCUS_2006_HS_ref_A_to_F.Rd
man/summary.saem.mmkin.Rd
man/SFORB.solution.Rd
man/parplot.Rd
man/mkinresplot.Rd
man/plot.mkinfit.Rd
man/mkindsg.Rd
man/create_deg_func.Rd
man/set_nd_nq.Rd
man/logistic.solution.Rd
man/logLik.saem.mmkin.Rd
man/synthetic_data_for_UBA_2014.Rd
man/saem.Rd
man/AIC.mmkin.Rd
man/illparms.Rd
man/max_twa_parent.Rd
man/dimethenamid_2018.Rd
man/multistart.Rd
man/mmkin.Rd
man/mkin_long_to_wide.Rd
man/summary_listing.Rd
man/mkinpredict.Rd
man/f_time_norm_focus.Rd
man/FOCUS_2006_FOMC_ref_A_to_F.Rd
man/mkinmod.Rd
man/llhist.Rd
man/status.Rd
man/Extract.mmkin.Rd
man/mkinds.Rd
man/schaefer07_complex_case.Rd
man/parms.Rd
man/ds_mixed.Rd
man/sigma_twocomp.Rd
man/FOMC.solution.Rd
man/summary.mmkin.Rd
man/focus_soil_moisture.Rd
man/update.mkinfit.Rd
man/mkinfit.Rd
man/residuals.mkinfit.Rd
man/NAFTA_SOP_2015.Rd
man/confint.mkinfit.Rd
man/lrtest.mkinfit.Rd
man/mccall81_245T.Rd
man/endpoints.Rd
man/read_spreadsheet.Rd
man/transform_odeparms.Rd
man/mkinerrplot.Rd
man/summary.mkinfit.Rd
man/plot.mmkin.Rd
man/HS.solution.Rd
man/intervals.saem.mmkin.Rd
man/FOCUS_2006_SFO_ref_A_to_F.Rd
man/plot.nafta.Rd
man/mixed.Rd
man/mhmkin.Rd
man/FOCUS_2006_DFOP_ref_A_to_B.Rd
