CAKE_export: Export a list of datasets format to a CAKE study file
In mkin: Kinetic Evaluation of Chemical Degradation Data

CAKE_export

R Documentation

Export a list of datasets format to a CAKE study file

Description

In addition to the datasets, the pathways in the degradation model can be specified as well.

Usage

CAKE_export(
  ds,
  map = c(parent = "Parent"),
  links = NA,
  filename = "CAKE_export.csf",
  path = ".",
  overwrite = FALSE,
  study = "Degradinol aerobic soil degradation",
  description = "",
  time_unit = "days",
  res_unit = "% AR",
  comment = "",
  date = Sys.Date(),
  optimiser = "IRLS"
)

Arguments

`ds`	A named list of datasets in long format as compatible with `mkinfit`.
`map`	A character vector with CAKE compartment names (Parent, A1, ...), named with the names used in the list of datasets.
`links`	An optional character vector of target compartments, named with the names of the source compartments. In order to make this easier, the names are used as in the datasets supplied.
`filename`	Where to write the result. Should end in .csf in order to be compatible with CAKE.
`path`	An optional path to the output file.
`overwrite`	If TRUE, existing files are overwritten.
`study`	The name of the study.
`description`	An optional description.
`time_unit`	The time unit for the residue data.
`res_unit`	The unit used for the residues.
`comment`	An optional comment.
`date`	The date of file creation.
`optimiser`	Can be OLS or IRLS.