mlr_pipeops_colapply: Apply a Function to each Column of a Task

mlr_pipeops_colapplyR Documentation

Apply a Function to each Column of a Task


Applies a function to each column of a task. Use the affect_columns parameter inherited from PipeOpTaskPreprocSimple to limit the columns this function should be applied to. This can be used for simple parameter transformations or type conversions (e.g. as.numeric).

The same function is applied during training and prediction. One important relationship for machine learning preprocessing is that during the prediction phase, the preprocessing on each data row should be independent of other rows. Therefore, the applicator function should always return a vector / list where each result component only depends on the corresponding input component and not on other components. As a rule of thumb, if the function f generates output different from Vectorize(f), it is not a function that should be used for applicator.


R6Class object inheriting from PipeOpTaskPreprocSimple/PipeOpTaskPreproc/PipeOp.


PipeOpColApply$new(id = "colapply", param_vals = list())
  • id :: character(1)
    Identifier of resulting object, default "colapply".

  • param_vals :: named list
    List of hyperparameter settings, overwriting the hyperparameter settings that would otherwise be set during construction. Default list().

Input and Output Channels

Input and output channels are inherited from PipeOpTaskPreprocSimple.

The output is the input Task with features changed according to the applicator parameter.


The ⁠$state⁠ is a named list with the ⁠$state⁠ elements inherited from PipeOpTaskPreprocSimple.


The parameters are the parameters inherited from PipeOpTaskPreprocSimple, as well as:

  • applicator :: function
    Function to apply to each column of the task. The return value should be a vector of the same length as the input, i.e., the function vectorizes over the input. A typical example would be as.numeric.
    The return value can also be a matrix, data.frame, or data.table. In this case, the length of the input must match the number of returned rows. The names of the resulting features of the output Task is based on the (column) name(s) of the return value of the applicator function, prefixed with the original feature name separated by a dot (.). Use Vectorize to create a vectorizing function from any function that ordinarily only takes one element input.


Calls map on the data, using the value of applicator as f. and coerces the output via


Only fields inherited from PipeOpTaskPreprocSimple/PipeOpTaskPreproc/PipeOp.


Only methods inherited from PipeOpTaskPreprocSimple/PipeOpTaskPreproc/PipeOp.

See Also

Other PipeOps: PipeOpEnsemble, PipeOpImpute, PipeOpTargetTrafo, PipeOpTaskPreprocSimple, PipeOpTaskPreproc, PipeOp, mlr_pipeops_boxcox, mlr_pipeops_branch, mlr_pipeops_chunk, mlr_pipeops_classbalancing, mlr_pipeops_classifavg, mlr_pipeops_classweights, mlr_pipeops_collapsefactors, mlr_pipeops_colroles, mlr_pipeops_copy, mlr_pipeops_datefeatures, mlr_pipeops_encodeimpact, mlr_pipeops_encodelmer, mlr_pipeops_encode, mlr_pipeops_featureunion, mlr_pipeops_filter, mlr_pipeops_fixfactors, mlr_pipeops_histbin, mlr_pipeops_ica, mlr_pipeops_imputeconstant, mlr_pipeops_imputehist, mlr_pipeops_imputelearner, mlr_pipeops_imputemean, mlr_pipeops_imputemedian, mlr_pipeops_imputemode, mlr_pipeops_imputeoor, mlr_pipeops_imputesample, mlr_pipeops_kernelpca, mlr_pipeops_learner, mlr_pipeops_missind, mlr_pipeops_modelmatrix, mlr_pipeops_multiplicityexply, mlr_pipeops_multiplicityimply, mlr_pipeops_mutate, mlr_pipeops_nmf, mlr_pipeops_nop, mlr_pipeops_ovrsplit, mlr_pipeops_ovrunite, mlr_pipeops_pca, mlr_pipeops_proxy, mlr_pipeops_quantilebin, mlr_pipeops_randomprojection, mlr_pipeops_randomresponse, mlr_pipeops_regravg, mlr_pipeops_removeconstants, mlr_pipeops_renamecolumns, mlr_pipeops_replicate, mlr_pipeops_scalemaxabs, mlr_pipeops_scalerange, mlr_pipeops_scale, mlr_pipeops_select, mlr_pipeops_smote, mlr_pipeops_spatialsign, mlr_pipeops_subsample, mlr_pipeops_targetinvert, mlr_pipeops_targetmutate, mlr_pipeops_targettrafoscalerange, mlr_pipeops_textvectorizer, mlr_pipeops_threshold, mlr_pipeops_tunethreshold, mlr_pipeops_unbranch, mlr_pipeops_updatetarget, mlr_pipeops_vtreat, mlr_pipeops_yeojohnson, mlr_pipeops



task = tsk("iris")
poca = po("colapply", applicator = as.character)
poca$train(list(task))[[1]]  # types are converted

# function that does not vectorize
f1 = function(x) {
  # we could use `ifelse` here, but that is not the point
  if (x > 1) {
  } else {
poca$param_set$values$applicator = Vectorize(f1)

# only affect Petal.* columns
poca$param_set$values$affect_columns = selector_grep("^Petal")

# function returning multiple columns
f2 = function(x) {
  cbind(floor = floor(x), ceiling = ceiling(x))
poca$param_set$values$applicator = f2
poca$param_set$values$affect_columns = selector_all()

mlr3pipelines documentation built on May 31, 2023, 9:26 p.m.