Analyses species distribution models and evaluates their performance. It includes functions for performing variation partitioning, calculating several measures of model discrimination and calibration, optimizing prediction thresholds based on a number of criteria, performing multivariate environmental similarity surface (MESS) analysis, and displaying various analytical plots.

Author | Barbosa A.M., Brown J.A., Jimenez-Valverde A., Real R. |

Date of publication | 2016-07-15 10:38:46 |

Maintainer | A. Marcia Barbosa <barbosa@uevora.pt> |

License | GPL-3 |

Version | 1.3.2 |

http://modeva.r-forge.r-project.org/ |

**arrangePlots:** Arrange plots

**AUC:** Area Under the ROC Curve

**Dsquared:** Proportion of deviance explained by a GLM

**evaluate:** Evaluate a GLM based on the elements of a confusion matrix.

**evenness:** Evenness in a binary vector.

**getBins:** Get bins of continuous values.

**getModEqn:** Get model equation

**HLfit:** Hosmer-Lemeshow goodness of fit

**MESS:** Multivariate Environmental Similarity Surfaces based on a...

**MillerCalib:** Miller's calibration satistics for logistic regression models

**modEvAmethods:** Methods implemented in modEvA functions

**modEvA-package:** Model Evaluation and Analysis

**multModEv:** Multiple model evaluation

**OA:** Overlap Analysis

**optiPair:** Optimize the discrimination threshold for a pair of related...

**optiThresh:** Optimize threshold for model evaluation.

**plotGLM:** Plot a generalized linear model

**prevalence:** Prevalence

**range01:** Shrink or stretch a vector to make it range between 0 and 1

**rotif.mods:** Rotifer distribution models

**RsqGLM:** R-squared measures for GLMs

**standard01:** Standardize to 0-1 (or vice-versa)

**threshMeasures:** Threshold-based measures of model evaluation

**varPart:** Variation partitioning

modEvA

modEvA/NAMESPACE

modEvA/NEWS

modEvA/data

modEvA/data/rotif.mods.rda

modEvA/data/datalist

modEvA/R

modEvA/R/modEvA-internal.R
modEvA/R/optiThresh.R
modEvA/R/RsqGLM.R
modEvA/R/standard01.R
modEvA/R/plotGLM.R
modEvA/R/evaluate.R
modEvA/R/modEvAmethods.R
modEvA/R/AUC.R
modEvA/R/range01.R
modEvA/R/Dsquared.R
modEvA/R/getBins.R
modEvA/R/OA.R
modEvA/R/getModEqn.R
modEvA/R/MESS.R
modEvA/R/prevalence.R
modEvA/R/multModEv.R
modEvA/R/varPart.R
modEvA/R/HLfit.R
modEvA/R/threshMeasures.R
modEvA/R/MillerCalib.R
modEvA/R/optiPair.R
modEvA/R/arrangePlots.R
modEvA/R/evenness.R
modEvA/MD5

modEvA/DESCRIPTION

modEvA/man

modEvA/man/optiThresh.Rd
modEvA/man/standard01.Rd
modEvA/man/plotGLM.Rd
modEvA/man/multModEv.Rd
modEvA/man/evenness.Rd
modEvA/man/OA.Rd
modEvA/man/getBins.Rd
modEvA/man/getModEqn.Rd
modEvA/man/RsqGLM.Rd
modEvA/man/rotif.mods.Rd
modEvA/man/range01.Rd
modEvA/man/AUC.Rd
modEvA/man/evaluate.Rd
modEvA/man/MESS.Rd
modEvA/man/Dsquared.Rd
modEvA/man/prevalence.Rd
modEvA/man/modEvAmethods.Rd
modEvA/man/arrangePlots.Rd
modEvA/man/MillerCalib.Rd
modEvA/man/threshMeasures.Rd
modEvA/man/varPart.Rd
modEvA/man/HLfit.Rd
modEvA/man/optiPair.Rd
modEvA/man/modEvA-package.Rd
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