morse: MOdelling Tools for Reproduction and Survival Data in Ecotoxicology

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Tools for ecotoxicologists and regulators dedicated to the mathematical and statistical modelling of bioassay data. They use advanced and innovative methods for a valuable quantitative environmental risk assessment.

Author
Marie Laure Delignette-Muller [aut], Philippe Ruiz [aut], Sandrine Charles [aut], Wandrille Duchemin [ctb], Christelle Lopes [ctb], Guillaume Kon- Kam-king [ctb], Philippe Veber [aut]
Date of publication
2016-06-08 15:40:21
Maintainer
Philippe Veber <philippe.veber@univ-lyon1.fr>
License
GPL (>= 2)
Version
2.2.0

View on CRAN

Man pages

as.survData
Cast for classes derived from 'survData'
cadmium1
Reproduction and survival datasets for _Daphnia magna_...
cadmium2
Reproduction and survival datasets for snails exposed to...
chlordan
Reproduction and survival datasets for _Daphnia magna_...
copper
Reproduction and survival datasets for _Daphnia magna_...
dichromate
Survival datasets for _Daphnia magna_ exposed to dichromate...
morse-package
MOdelling Tools for Reproduction and Survival Data in...
plotDoseResponse
Plot Dose-response from raw data
plotDoseResponse.reproData
Plotting method for 'reproData' objects
plotDoseResponse.survData
Plotting method for 'survData' objects
plot.reproData
Plotting method for 'reproData' objects
plot.reproFitTT
Plotting method for 'reproFitTT' objects
plot.survData
Plotting method for 'survData' objects
plot.survFitTKTD
Plotting method for 'survFitTKTD' objects
plot.survFitTT
Plotting method for 'survFitTT' objects
ppc
Posterior predictive check plot
ppc.reproFitTT
Posterior predictive check plot for 'reproFitTT' objects
ppc.survFitTKTD
Posterior predictive check plot for 'survFitTKTD' objects
ppc.survFitTT
Posterior predictive check plot for 'survFitTT' objects
print.reproFitTT
Print of 'reproFitTT' object
print.survFitTKTD
Print of 'survFitTKTD' object
print.survFitTT
Print of 'survFitTT' object
propiconazole
Survival datasets for _Gammarus pulex_ exposed to...
reproData
Creates a dataset for reproduction toxicity analysis
reproDataCheck
Checks if an object can be used to perform reproduction...
reproFitTT
Fits a Bayesian exposure-response model for target-time...
summary.reproData
Summary for 'reproData' objects
summary.reproFitTT
Summary for 'reproFitTT' objects
summary.survData
Summary for 'survData' objects
summary.survFitTKTD
Summary for 'survFitTKTD' objects
summary.survFitTT
Summary for 'survFitTT' objects
survData
Creates a dataset for survival analysis
survDataCheck
Checks if an object can be used to perform survival analysis
survFitTKTD
Fits a TKTD for survival analysis using Bayesian inference
survFitTT
Fits a Bayesian exposure-response model for target-time...
zinc
Reproduction and survival datasets for _Daphnia magna_...

Files in this package

morse
morse/inst
morse/inst/doc
morse/inst/doc/modelling.pdf
morse/inst/doc/tutorial.R
morse/inst/doc/modelling.Snw
morse/inst/doc/tutorial.html
morse/inst/doc/tutorial.Rmd
morse/tests
morse/tests/testthat.R
morse/tests/testthat
morse/tests/testthat/test-surv.R
morse/tests/testthat/test-repro.R
morse/NAMESPACE
morse/NEWS
morse/data
morse/data/cadmium2.rda
morse/data/dichromate.rda
morse/data/chlordan.rda
morse/data/cadmium1.rda
morse/data/propiconazole.rda
morse/data/zinc.rda
morse/data/copper.rda
morse/R
morse/R/print.survFitTT.R
morse/R/reproFitTT.R
morse/R/plot.survData.R
morse/R/summary.survFitTT.R
morse/R/errorTable.R
morse/R/reproDataCheck.R
morse/R/morse-internal.R
morse/R/plot.survFitTKTD.R
morse/R/plot.reproFitTT.R
morse/R/survDataCheck.R
morse/R/print.survFitTKTD.R
morse/R/ppc.R
morse/R/ppc.survFitTKTD.R
morse/R/plot.reproData.R
morse/R/summary.survFitTKTD.R
morse/R/plotDoseResponse.survData.R
morse/R/as.survData.R
morse/R/summary.reproFitTT.R
morse/R/print.reproFitTT.R
morse/R/survFitTKTD.R
morse/R/plotDoseResponse.R
morse/R/summary.survData.R
morse/R/summary.reproData.R
morse/R/ppc.reproFitTT.R
morse/R/plotDoseResponse.reproData.R
morse/R/survData.R
morse/R/morse.R
morse/R/plot.survFitTT.R
morse/R/survFitTT.R
morse/R/reproData.R
morse/R/ppc.survFitTT.R
morse/vignettes
morse/vignettes/modelling.Snw
morse/vignettes/clean.sh
morse/vignettes/tutorial.Rmd
morse/vignettes/biblio.bib
morse/README.md
morse/MD5
morse/build
morse/build/vignette.rds
morse/DESCRIPTION
morse/man
morse/man/cadmium1.Rd
morse/man/ppc.survFitTT.Rd
morse/man/plot.reproFitTT.Rd
morse/man/as.survData.Rd
morse/man/print.reproFitTT.Rd
morse/man/summary.survFitTKTD.Rd
morse/man/cadmium2.Rd
morse/man/plotDoseResponse.reproData.Rd
morse/man/copper.Rd
morse/man/reproData.Rd
morse/man/reproDataCheck.Rd
morse/man/plotDoseResponse.Rd
morse/man/plot.survFitTT.Rd
morse/man/plotDoseResponse.survData.Rd
morse/man/survDataCheck.Rd
morse/man/print.survFitTT.Rd
morse/man/zinc.Rd
morse/man/summary.reproData.Rd
morse/man/survFitTKTD.Rd
morse/man/plot.reproData.Rd
morse/man/summary.survFitTT.Rd
morse/man/propiconazole.Rd
morse/man/plot.survData.Rd
morse/man/chlordan.Rd
morse/man/survData.Rd
morse/man/plot.survFitTKTD.Rd
morse/man/ppc.survFitTKTD.Rd
morse/man/reproFitTT.Rd
morse/man/survFitTT.Rd
morse/man/print.survFitTKTD.Rd
morse/man/ppc.reproFitTT.Rd
morse/man/ppc.Rd
morse/man/summary.survData.Rd
morse/man/summary.reproFitTT.Rd
morse/man/morse-package.Rd
morse/man/dichromate.Rd