morse: MOdelling Tools for Reproduction and Survival Data in Ecotoxicology

Tools for ecotoxicologists and regulators dedicated to the mathematical and statistical modelling of bioassay data. They use advanced and innovative methods for a valuable quantitative environmental risk assessment.

Install the latest version of this package by entering the following in R:
install.packages("morse")
AuthorMarie Laure Delignette-Muller [aut], Philippe Ruiz [aut], Sandrine Charles [aut], Wandrille Duchemin [ctb], Christelle Lopes [ctb], Guillaume Kon- Kam-king [ctb], Philippe Veber [aut]
Date of publication2016-06-08 15:40:21
MaintainerPhilippe Veber <philippe.veber@univ-lyon1.fr>
LicenseGPL (>= 2)
Version2.2.0

View on CRAN

Man pages

as.survData: Cast for classes derived from 'survData'

cadmium1: Reproduction and survival datasets for _Daphnia magna_...

cadmium2: Reproduction and survival datasets for snails exposed to...

chlordan: Reproduction and survival datasets for _Daphnia magna_...

copper: Reproduction and survival datasets for _Daphnia magna_...

dichromate: Survival datasets for _Daphnia magna_ exposed to dichromate...

morse-package: MOdelling Tools for Reproduction and Survival Data in...

plotDoseResponse: Plot Dose-response from raw data

plotDoseResponse.reproData: Plotting method for 'reproData' objects

plotDoseResponse.survData: Plotting method for 'survData' objects

plot.reproData: Plotting method for 'reproData' objects

plot.reproFitTT: Plotting method for 'reproFitTT' objects

plot.survData: Plotting method for 'survData' objects

plot.survFitTKTD: Plotting method for 'survFitTKTD' objects

plot.survFitTT: Plotting method for 'survFitTT' objects

ppc: Posterior predictive check plot

ppc.reproFitTT: Posterior predictive check plot for 'reproFitTT' objects

ppc.survFitTKTD: Posterior predictive check plot for 'survFitTKTD' objects

ppc.survFitTT: Posterior predictive check plot for 'survFitTT' objects

print.reproFitTT: Print of 'reproFitTT' object

print.survFitTKTD: Print of 'survFitTKTD' object

print.survFitTT: Print of 'survFitTT' object

propiconazole: Survival datasets for _Gammarus pulex_ exposed to...

reproData: Creates a dataset for reproduction toxicity analysis

reproDataCheck: Checks if an object can be used to perform reproduction...

reproFitTT: Fits a Bayesian exposure-response model for target-time...

summary.reproData: Summary for 'reproData' objects

summary.reproFitTT: Summary for 'reproFitTT' objects

summary.survData: Summary for 'survData' objects

summary.survFitTKTD: Summary for 'survFitTKTD' objects

summary.survFitTT: Summary for 'survFitTT' objects

survData: Creates a dataset for survival analysis

survDataCheck: Checks if an object can be used to perform survival analysis

survFitTKTD: Fits a TKTD for survival analysis using Bayesian inference

survFitTT: Fits a Bayesian exposure-response model for target-time...

zinc: Reproduction and survival datasets for _Daphnia magna_...

Functions

as.survData Man page
cadmium1 Man page
cadmium2 Man page
chlordan Man page
copper Man page
dichromate Man page
morse Man page
morse-package Man page
plotDoseResponse Man page
plotDoseResponse.reproData Man page
plotDoseResponse.survData Man page
plot.reproData Man page
plot.reproFitTT Man page
plot.survData Man page
plot.survFitTKTD Man page
plot.survFitTT Man page
ppc Man page
ppc.reproFitTT Man page
ppc.survFitTKTD Man page
ppc.survFitTT Man page
print.reproFitTT Man page
print.survFitTKTD Man page
print.survFitTT Man page
propiconazole Man page
reproData Man page
reproDataCheck Man page
reproFitTT Man page
summary.reproData Man page
summary.reproFitTT Man page
summary.survData Man page
summary.survFitTKTD Man page
summary.survFitTT Man page
survData Man page
survDataCheck Man page
survFitTKTD Man page
survFitTT Man page
zinc Man page

Files

inst
inst/doc
inst/doc/modelling.pdf
inst/doc/tutorial.R
inst/doc/modelling.Snw
inst/doc/tutorial.html
inst/doc/tutorial.Rmd
tests
tests/testthat.R
tests/testthat
tests/testthat/test-surv.R tests/testthat/test-repro.R
NAMESPACE
NEWS
data
data/cadmium2.rda
data/dichromate.rda
data/chlordan.rda
data/cadmium1.rda
data/propiconazole.rda
data/zinc.rda
data/copper.rda
R
R/print.survFitTT.R R/reproFitTT.R R/plot.survData.R R/summary.survFitTT.R R/errorTable.R R/reproDataCheck.R R/morse-internal.R R/plot.survFitTKTD.R R/plot.reproFitTT.R R/survDataCheck.R R/print.survFitTKTD.R R/ppc.R R/ppc.survFitTKTD.R R/plot.reproData.R R/summary.survFitTKTD.R R/plotDoseResponse.survData.R R/as.survData.R R/summary.reproFitTT.R R/print.reproFitTT.R R/survFitTKTD.R R/plotDoseResponse.R R/summary.survData.R R/summary.reproData.R R/ppc.reproFitTT.R R/plotDoseResponse.reproData.R R/survData.R R/morse.R R/plot.survFitTT.R R/survFitTT.R R/reproData.R R/ppc.survFitTT.R
vignettes
vignettes/modelling.Snw
vignettes/clean.sh
vignettes/tutorial.Rmd
vignettes/biblio.bib
README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/cadmium1.Rd man/ppc.survFitTT.Rd man/plot.reproFitTT.Rd man/as.survData.Rd man/print.reproFitTT.Rd man/summary.survFitTKTD.Rd man/cadmium2.Rd man/plotDoseResponse.reproData.Rd man/copper.Rd man/reproData.Rd man/reproDataCheck.Rd man/plotDoseResponse.Rd man/plot.survFitTT.Rd man/plotDoseResponse.survData.Rd man/survDataCheck.Rd man/print.survFitTT.Rd man/zinc.Rd man/summary.reproData.Rd man/survFitTKTD.Rd man/plot.reproData.Rd man/summary.survFitTT.Rd man/propiconazole.Rd man/plot.survData.Rd man/chlordan.Rd man/survData.Rd man/plot.survFitTKTD.Rd man/ppc.survFitTKTD.Rd man/reproFitTT.Rd man/survFitTT.Rd man/print.survFitTKTD.Rd man/ppc.reproFitTT.Rd man/ppc.Rd man/summary.survData.Rd man/summary.reproFitTT.Rd man/morse-package.Rd man/dichromate.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.