plot.survDataCstExp: Plotting method for 'survData' objects

In morse: Modelling Reproduction and Survival Data in Ecotoxicology

Plotting method for survData objects

Description

This is the generic plot S3 method for the survData class. It plots the number of survivors as a function of time.

Usage

## S3 method for class 'survDataCstExp'
plot(
  x,
  xlab = "Time",
  ylab = "Number of survivors",
  main = NULL,
  concentration = NULL,
  style = "ggplot",
  pool.replicate = FALSE,
  addlegend = FALSE,
  remove.someLabels = FALSE,
  ...
)

Arguments

x	an object of class survData
xlab	a label for the X-axis, by default Time
ylab	a label for the Y-axis, by default Number of survivors
main	main title for the plot
concentration	a numeric value corresponding to some concentration(s) in data. If concentration = NULL, draws a plot for each concentration
style	graphical backend, can be 'generic' or 'ggplot'
pool.replicate	if TRUE, the datapoints of each replicate are summed for a same concentration
addlegend	if TRUE, adds a default legend to the plot
remove.someLabels	if TRUE, removes 3/4 of X-axis labels in 'ggplot' style to avoid label overlap
...	Further arguments to be passed to generic methods

Value

a plot of class ggplot

Note

When style = "ggplot" (default), the function calls function ggplot and returns an object of class ggplot.

Examples

# (1) Load the data
data(zinc)
zinc <- survData(zinc)

# (2) Plot survival data with a ggplot style
plot(zinc)

# (3) Plot the survival data for one specific concentration
plot(zinc, concentration = 0.66)

morse documentation built on Oct. 29, 2022, 1:14 a.m.