fixedNumberOfFounderAlleles: Convert fully informative experiment to one with a fixed...
In mpMap2: Genetic Analysis of Multi-Parent Recombinant Inbred Lines
Description
Usage
Arguments
Details
Value
Examples
View source: R/fixedNumberOfFounderAlleles.R
Description
Convert a fully informative experiment to one with a fixed number of alleles per marker
Usage
1
fixedNumberOfFounderAlleles(alleles)
Arguments
alleles
Number of alleles for each marker
Details
By default, simulated data is fully informative, so every founder carries its own allele, and all heterozygotes are distinguishable.
This function takes in a fully informative experiment, and changes every marker so that it has a fixed number of founder alleles. Heterozygotes are also changed, so every combination of different alleles is still distinguishable.
Value
An object of internal class fixedNumberOfFounderAlleles suitable for application to an object of class mpcross using the addition operation.
Examples
1
2
3
4
data(simulatedFourParentData)
founders(simulatedFourParentData)[, 1:10]
altered <- simulatedFourParentData + fixedNumberOfFounderAlleles(3)
founders(altered)[, 1:10]
mpMap2 documentation built on Sept. 13, 2020, 5:17 p.m.
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Description Usage Arguments Details Value Examples
View source: R/fixedNumberOfFounderAlleles.R
Description
Convert a fully informative experiment to one with a fixed number of alleles per marker
Usage
1 | fixedNumberOfFounderAlleles(alleles)
|
Arguments
alleles |
Number of alleles for each marker |
Details
By default, simulated data is fully informative, so every founder carries its own allele, and all heterozygotes are distinguishable.
This function takes in a fully informative experiment, and changes every marker so that it has a fixed number of founder alleles. Heterozygotes are also changed, so every combination of different alleles is still distinguishable.
Value
An object of internal class fixedNumberOfFounderAlleles suitable for application to an object of class mpcross using the addition operation.
Examples
1 2 3 4 | data(simulatedFourParentData)
founders(simulatedFourParentData)[, 1:10]
altered <- simulatedFourParentData + fixedNumberOfFounderAlleles(3)
founders(altered)[, 1:10]
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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