getPositions: Get positions of genetic markers

In mpMap2: Genetic Analysis of Multi-Parent Recombinant Inbred Lines

Description

Get positions of genetic markers, on their respective chromosomes

Usage

getPositions(mpcrossMapped, markers)

Arguments

mpcrossMapped	The mpcross object containing the map of interest
markers	The markers for which to get the positions

Details

Get positions of genetic markers in cM, on their respective chromosomes

Value

A named vector of numbers, with names corresponding to the selected genetic markers, and values corresponding to genetic positions.

Examples

map <- qtl::sim.map()
pedigree <- f2Pedigree(1000)
cross <- simulateMPCross(map = map, pedigree = pedigree, mapFunction = haldane, seed = 1)
mappedCross <- mpcrossMapped(cross = cross, map = map)
getPositions(mappedCross, c("D13M3", "DXM1", "DXM3"))

mpMap2 documentation built on Sept. 13, 2020, 5:17 p.m.