NEWS.md

In mpwR: Standardized Comparison of Workflows in Mass Spectrometry-Based Bottom-Up Proteomics

mpwR 0.1.5.1

• Minor improvements for recent envir developments

mpwR 0.1.5

• Updated prepare_mpwR function - improvements for MaxQuant import: Precursor Intensities with 0 are excluded
• Updated prepare_mpwR function - improvements for DIA-NN import: Precursor.Quantity with 0 are excluded
• Updated prepare_mpwR function - improvements for DIA-NN import: new parameter added to filter specific PG.Q.Value and Q.Value; default for both at 1% (0.01)

mpwR 0.1.4

• Added function load_experimental_design
• Added function write_experimental_design
• Added further user-friendly error messaging in prepare_mpwR
• Added further description in write_generic_template

mpwR 0.1.3

• Added article "Output Explanations" to package website
• Added article "Use case - Round robin study" to package website
• Added article "Use case - Software comparison" to package website
• Added generic input option
• Added function to write template for generic input

mpwR 0.1.2

Minor changes

• Added MQ pg default filter.
• Altered color palette for MC/DC stacked barplots.
• Altered column requirements for PD.
• Minor changes in vignettes.

Bug fix

• Fixed rounding issue in DC/MC percentage plots.

mpwR 0.1.1

• Minor changes in some examples.
• Minor changes in vignettes.

mpwR 0.1.0

• First release version.

mpwR documentation built on June 8, 2025, 10:47 a.m.