Contains functions for data preparation, descriptives, hazard estimation and prediction with Aalen-Johansen or simulation in competing risks and multi-state models.

Author | Hein Putter, Liesbeth de Wreede, Marta Fiocco, with contributions by Ronald Geskus |

Date of publication | 2016-12-04 14:52:36 |

Maintainer | Hein Putter <H.Putter@lumc.nl> |

License | GPL (>= 2) |

Version | 0.2.10 |

http://www.msbi.nl/putter |

**aidssi:** Data from the Amsterdam Cohort Studies on HIV infection and...

**bmt:** BMT data from Klein and Moeschberger

**crprep:** Function to create weighted data set for competing risks...

**cuminc:** Calculate nonparametric cumulative incidence functions and...

**cutLMms:** Cut a multi-state data set at a landmark time point

**ebmt1:** Data from the European Society for Blood and Marrow...

**ebmt2:** Data from the European Society for Blood and Marrow...

**ebmt3:** Data from the European Society for Blood and Marrow...

**ebmt4:** Data from the European Society for Blood and Marrow...

**ELOS:** Expected length of stay

**events:** Count number of observed transitions

**expand.covs:** Expand covariates in competing risks dataset in stacked...

**expand.covs.msdata:** Expand covariates in multi-state dataset in long format

**LMAJ:** Landmark Aalen-Johansen method

**msboot:** Bootstrap function in multi-state models

**msfit:** Compute subject-specific transition hazards with...

**msprep:** Function to prepare dataset for multi-state modeling in long...

**mssample:** Sample paths through a multi-state model

**mstate-package:** Data preparation, estimation and prediction in multi-state...

**paths:** Find all possible trajectories through a given multi-state...

**plot.msfit:** Plot method for an msfit object

**plot.probtrans:** Plot method for a probtrans object

**print.msdata:** Print method for a msdata object

**probtrans:** Compute subject-specific or overall transition probabilities...

**prothr:** Abnormal prothrombin levels in liver cirrhosis

**redrank:** Reduced rank proportional hazards model for competing risks...

**summary.msfit:** Summary method for an msfit object

**summary.probtrans:** Summary method for a probtrans object

**trans:** Define transition matrix for multi-state model

**xsect:** Make a cross-section of multi-state data at a given time...

mstate

mstate/inst

mstate/inst/CITATION

mstate/inst/doc

mstate/inst/doc/Tutorial.R

mstate/inst/doc/Tutorial.pdf

mstate/inst/doc/Tutorial.Rnw

mstate/src

mstate/src/agmssurv.c

mstate/NAMESPACE

mstate/data

mstate/data/prothr.RData

mstate/data/aidssi.RData

mstate/data/bmt.RData

mstate/data/ebmt1.RData

mstate/data/ebmt2.RData

mstate/data/ebmt4.RData

mstate/data/ebmt3.RData

mstate/data/aidssi2.RData

mstate/R

mstate/R/plot.msfit.R
mstate/R/LMAJ.R
mstate/R/print.Cuminc.R
mstate/R/crprep.R
mstate/R/events.R
mstate/R/create.wData.omega.R
mstate/R/xsect.R
mstate/R/ELOS.R
mstate/R/summary.probtrans.R
mstate/R/msboot.R
mstate/R/probtrans.R
mstate/R/transMat.R
mstate/R/paths.R
mstate/R/plot.Cuminc.R
mstate/R/redrank.R
mstate/R/mssample.R
mstate/R/expand.covs.R
mstate/R/summary.Cuminc.R
mstate/R/summary.msfit.R
mstate/R/msprep.R
mstate/R/misc.R
mstate/R/trans.R
mstate/R/cutLMms.R
mstate/R/msfit.R
mstate/R/print.msdata.R
mstate/R/plot.probtrans.R
mstate/R/cuminc.R
mstate/vignettes

mstate/vignettes/Tutorial.bib

mstate/vignettes/Tutorial.Rnw

mstate/MD5

mstate/build

mstate/build/vignette.rds

mstate/DESCRIPTION

mstate/ChangeLog

mstate/man

mstate/man/msfit.Rd
mstate/man/paths.Rd
mstate/man/msprep.Rd
mstate/man/xsect.Rd
mstate/man/expand.covs.msdata.Rd
mstate/man/ebmt3.Rd
mstate/man/bmt.Rd
mstate/man/print.msdata.Rd
mstate/man/crprep.Rd
mstate/man/ebmt1.Rd
mstate/man/ELOS.Rd
mstate/man/redrank.Rd
mstate/man/cutLMms.Rd
mstate/man/prothr.Rd
mstate/man/plot.probtrans.Rd
mstate/man/summary.msfit.Rd
mstate/man/aidssi.Rd
mstate/man/probtrans.Rd
mstate/man/LMAJ.Rd
mstate/man/cuminc.Rd
mstate/man/plot.msfit.Rd
mstate/man/trans.Rd
mstate/man/ebmt4.Rd
mstate/man/summary.probtrans.Rd
mstate/man/mstate-package.Rd
mstate/man/mssample.Rd
mstate/man/expand.covs.Rd
mstate/man/ebmt2.Rd
mstate/man/events.Rd
mstate/man/msboot.Rd
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