mstate: Data Preparation, Estimation and Prediction in Multi-State Models

Contains functions for data preparation, descriptives, hazard estimation and prediction with Aalen-Johansen or simulation in competing risks and multi-state models.

Author
Hein Putter, Liesbeth de Wreede, Marta Fiocco, with contributions by Ronald Geskus
Date of publication
2016-12-04 14:52:36
Maintainer
Hein Putter <H.Putter@lumc.nl>
License
GPL (>= 2)
Version
0.2.10
URLs

View on CRAN

Man pages

aidssi
Data from the Amsterdam Cohort Studies on HIV infection and...
bmt
BMT data from Klein and Moeschberger
crprep
Function to create weighted data set for competing risks...
cuminc
Calculate nonparametric cumulative incidence functions and...
cutLMms
Cut a multi-state data set at a landmark time point
ebmt1
Data from the European Society for Blood and Marrow...
ebmt2
Data from the European Society for Blood and Marrow...
ebmt3
Data from the European Society for Blood and Marrow...
ebmt4
Data from the European Society for Blood and Marrow...
ELOS
Expected length of stay
events
Count number of observed transitions
expand.covs
Expand covariates in competing risks dataset in stacked...
expand.covs.msdata
Expand covariates in multi-state dataset in long format
LMAJ
Landmark Aalen-Johansen method
msboot
Bootstrap function in multi-state models
msfit
Compute subject-specific transition hazards with...
msprep
Function to prepare dataset for multi-state modeling in long...
mssample
Sample paths through a multi-state model
mstate-package
Data preparation, estimation and prediction in multi-state...
paths
Find all possible trajectories through a given multi-state...
plot.msfit
Plot method for an msfit object
plot.probtrans
Plot method for a probtrans object
print.msdata
Print method for a msdata object
probtrans
Compute subject-specific or overall transition probabilities...
prothr
Abnormal prothrombin levels in liver cirrhosis
redrank
Reduced rank proportional hazards model for competing risks...
summary.msfit
Summary method for an msfit object
summary.probtrans
Summary method for a probtrans object
trans
Define transition matrix for multi-state model
xsect
Make a cross-section of multi-state data at a given time...

Files in this package

mstate
mstate/inst
mstate/inst/CITATION
mstate/inst/doc
mstate/inst/doc/Tutorial.R
mstate/inst/doc/Tutorial.pdf
mstate/inst/doc/Tutorial.Rnw
mstate/src
mstate/src/agmssurv.c
mstate/NAMESPACE
mstate/data
mstate/data/prothr.RData
mstate/data/aidssi.RData
mstate/data/bmt.RData
mstate/data/ebmt1.RData
mstate/data/ebmt2.RData
mstate/data/ebmt4.RData
mstate/data/ebmt3.RData
mstate/data/aidssi2.RData
mstate/R
mstate/R/plot.msfit.R
mstate/R/LMAJ.R
mstate/R/print.Cuminc.R
mstate/R/crprep.R
mstate/R/events.R
mstate/R/create.wData.omega.R
mstate/R/xsect.R
mstate/R/ELOS.R
mstate/R/summary.probtrans.R
mstate/R/msboot.R
mstate/R/probtrans.R
mstate/R/transMat.R
mstate/R/paths.R
mstate/R/plot.Cuminc.R
mstate/R/redrank.R
mstate/R/mssample.R
mstate/R/expand.covs.R
mstate/R/summary.Cuminc.R
mstate/R/summary.msfit.R
mstate/R/msprep.R
mstate/R/misc.R
mstate/R/trans.R
mstate/R/cutLMms.R
mstate/R/msfit.R
mstate/R/print.msdata.R
mstate/R/plot.probtrans.R
mstate/R/cuminc.R
mstate/vignettes
mstate/vignettes/Tutorial.bib
mstate/vignettes/Tutorial.Rnw
mstate/MD5
mstate/build
mstate/build/vignette.rds
mstate/DESCRIPTION
mstate/ChangeLog
mstate/man
mstate/man/msfit.Rd
mstate/man/paths.Rd
mstate/man/msprep.Rd
mstate/man/xsect.Rd
mstate/man/expand.covs.msdata.Rd
mstate/man/ebmt3.Rd
mstate/man/bmt.Rd
mstate/man/print.msdata.Rd
mstate/man/crprep.Rd
mstate/man/ebmt1.Rd
mstate/man/ELOS.Rd
mstate/man/redrank.Rd
mstate/man/cutLMms.Rd
mstate/man/prothr.Rd
mstate/man/plot.probtrans.Rd
mstate/man/summary.msfit.Rd
mstate/man/aidssi.Rd
mstate/man/probtrans.Rd
mstate/man/LMAJ.Rd
mstate/man/cuminc.Rd
mstate/man/plot.msfit.Rd
mstate/man/trans.Rd
mstate/man/ebmt4.Rd
mstate/man/summary.probtrans.Rd
mstate/man/mstate-package.Rd
mstate/man/mssample.Rd
mstate/man/expand.covs.Rd
mstate/man/ebmt2.Rd
mstate/man/events.Rd
mstate/man/msboot.Rd