mstate: Data Preparation, Estimation and Prediction in Multi-State Models

Contains functions for data preparation, descriptives, hazard estimation and prediction with Aalen-Johansen or simulation in competing risks and multi-state models.

AuthorHein Putter, Liesbeth de Wreede, Marta Fiocco, with contributions by Ronald Geskus
Date of publication2016-12-04 14:52:36
MaintainerHein Putter <H.Putter@lumc.nl>
LicenseGPL (>= 2)
Version0.2.10
http://www.msbi.nl/putter

View on CRAN

Man pages

aidssi: Data from the Amsterdam Cohort Studies on HIV infection and...

bmt: BMT data from Klein and Moeschberger

crprep: Function to create weighted data set for competing risks...

cuminc: Calculate nonparametric cumulative incidence functions and...

cutLMms: Cut a multi-state data set at a landmark time point

ebmt1: Data from the European Society for Blood and Marrow...

ebmt2: Data from the European Society for Blood and Marrow...

ebmt3: Data from the European Society for Blood and Marrow...

ebmt4: Data from the European Society for Blood and Marrow...

ELOS: Expected length of stay

events: Count number of observed transitions

expand.covs: Expand covariates in competing risks dataset in stacked...

expand.covs.msdata: Expand covariates in multi-state dataset in long format

LMAJ: Landmark Aalen-Johansen method

msboot: Bootstrap function in multi-state models

msfit: Compute subject-specific transition hazards with...

msprep: Function to prepare dataset for multi-state modeling in long...

mssample: Sample paths through a multi-state model

mstate-package: Data preparation, estimation and prediction in multi-state...

paths: Find all possible trajectories through a given multi-state...

plot.msfit: Plot method for an msfit object

plot.probtrans: Plot method for a probtrans object

print.msdata: Print method for a msdata object

probtrans: Compute subject-specific or overall transition probabilities...

prothr: Abnormal prothrombin levels in liver cirrhosis

redrank: Reduced rank proportional hazards model for competing risks...

summary.msfit: Summary method for an msfit object

summary.probtrans: Summary method for a probtrans object

trans: Define transition matrix for multi-state model

xsect: Make a cross-section of multi-state data at a given time...

Files in this package

mstate
mstate/inst
mstate/inst/CITATION
mstate/inst/doc
mstate/inst/doc/Tutorial.R
mstate/inst/doc/Tutorial.pdf
mstate/inst/doc/Tutorial.Rnw
mstate/src
mstate/src/agmssurv.c
mstate/NAMESPACE
mstate/data
mstate/data/prothr.RData
mstate/data/aidssi.RData
mstate/data/bmt.RData
mstate/data/ebmt1.RData
mstate/data/ebmt2.RData
mstate/data/ebmt4.RData
mstate/data/ebmt3.RData
mstate/data/aidssi2.RData
mstate/R
mstate/R/plot.msfit.R mstate/R/LMAJ.R mstate/R/print.Cuminc.R mstate/R/crprep.R mstate/R/events.R mstate/R/create.wData.omega.R mstate/R/xsect.R mstate/R/ELOS.R mstate/R/summary.probtrans.R mstate/R/msboot.R mstate/R/probtrans.R mstate/R/transMat.R mstate/R/paths.R mstate/R/plot.Cuminc.R mstate/R/redrank.R mstate/R/mssample.R mstate/R/expand.covs.R mstate/R/summary.Cuminc.R mstate/R/summary.msfit.R mstate/R/msprep.R mstate/R/misc.R mstate/R/trans.R mstate/R/cutLMms.R mstate/R/msfit.R mstate/R/print.msdata.R mstate/R/plot.probtrans.R mstate/R/cuminc.R
mstate/vignettes
mstate/vignettes/Tutorial.bib
mstate/vignettes/Tutorial.Rnw
mstate/MD5
mstate/build
mstate/build/vignette.rds
mstate/DESCRIPTION
mstate/ChangeLog
mstate/man
mstate/man/msfit.Rd mstate/man/paths.Rd mstate/man/msprep.Rd mstate/man/xsect.Rd mstate/man/expand.covs.msdata.Rd mstate/man/ebmt3.Rd mstate/man/bmt.Rd mstate/man/print.msdata.Rd mstate/man/crprep.Rd mstate/man/ebmt1.Rd mstate/man/ELOS.Rd mstate/man/redrank.Rd mstate/man/cutLMms.Rd mstate/man/prothr.Rd mstate/man/plot.probtrans.Rd mstate/man/summary.msfit.Rd mstate/man/aidssi.Rd mstate/man/probtrans.Rd mstate/man/LMAJ.Rd mstate/man/cuminc.Rd mstate/man/plot.msfit.Rd mstate/man/trans.Rd mstate/man/ebmt4.Rd mstate/man/summary.probtrans.Rd mstate/man/mstate-package.Rd mstate/man/mssample.Rd mstate/man/expand.covs.Rd mstate/man/ebmt2.Rd mstate/man/events.Rd mstate/man/msboot.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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