plot.MSThermResult: Plot MSThermResult object.

In mstherm: Analyze MS/MS Protein Melting Data

Description

Generate a denaturation plot for an modeled protein/group.

Usage

## S3 method for class 'MSThermResult'
plot(x, table = T, col, CI.points = T, CI.Tm = T,
  ...)

Arguments

x	An MSThermResult object
table	(T/f) include table of per-replicate parameters
col	array of colors used to plot samples
CI.points	(T/F) plot temperature point confidence intervals
CI.Tm	(T/F) plot Tm confidence intervals
...	other parameters passed through to plot()

Value

Nothing

Examples

control <- system.file("extdata", "demo_project/control.tsv", package="mstherm")
annots  <- system.file("extdata", "demo_project/annots.tsv",  package="mstherm")
expt    <- MSThermExperiment(control, annotations=annots)
expt    <- normalize_to_std(expt, "cRAP_ALBU_BOVIN", plot=FALSE)
res     <- model_experiment(expt, bootstrap=FALSE, np=2)

# plot single MSThermResult
plot(res$P38707)

# plot all proteins (e.g. to pdf device, one-per-page)
plot(res)

mstherm documentation built on May 2, 2019, 9:31 a.m.