| ABH_pi0_est | Lowest Slope Line (LSL) method of Hochberg and Benjamini for... |
| adaptiveBH | Benjamini-Hochberg (2000) adaptive linear step-up procedure |
| adaptiveSTS | Storey-Taylor-Siegmund (2004) adaptive step-up procedure |
| adjPValuesPlot | A function plotting adjusted p-values... |
| aorc | Step-up-down test based on the asymptotically optimal... |
| augmentation | Wrapper function to the augmentation methods of the multtest... |
| BH | Benjamini-Hochberg (1995) linear step-up procedure |
| BL | Benjamini-Liu (1999) step-down procedure |
| BlaRoq | Blanchard-Roquain (2008) step-up Procedure for arbitrary... |
| bonferroni | Bonferroni correction... |
| BR_pi0_est | Estimate of pi0 using the one-step Blanchard-Roquain... |
| BY | Benjamini-Yekutieli (2001) step-up procedure |
| calculateBetaAdjustment | Calculating the beta adjustment factor for the asymptotically... |
| compareMutoss | Functions for comparing outputs of different procedures. |
| ErrorControl | Class ErrorControl |
| fisher22_fast | Fisher (2x2) table association analysis for calculating one... |
| fisher22.marginal | Fisher (2x2) table association analysis for calculating all... |
| fisher23_fast | Fisher-type (2x3) table association analysis for calculating... |
| fisher23.marginal | Fisher-type (2x3) table association analysis for calculating... |
| ftest.marginal | Marginal F test |
| gao | Xin Gao's non-parametric multiple test procedure is applied... |
| gatherParameters | Extracts the parameters from the simulation()-Object |
| gatherStatistics | Gathering statistics from simulation()-Object |
| hochberg | Hochberg (1988) step-up procedure |
| holm | Holm's (1979) step-down-procedure |
| hommel | Hommel's (1988) step-up-procedure |
| indepBR | Blanchard-Roquain (2009) 1-stage adaptive step-up |
| jointCDF.orderedUnif | Joint cumulative distribution function of order statistics of... |
| linearStepUp | Linear Step Up Service Function... |
| multcomp.wrapper | Simultaneous confidence intervals for arbitrary parametric... |
| multiple.down | Benjamini-Krieger-Yekutieli (2006) Multi-Stage Step-Down |
| multiple.down.adjust | A service function used by multiple... |
| mu.test.class | Test for compatible classes for comparison... |
| mu.test.name | Tests if all hypotheses have the same names. |
| mu.test.rates | Tests that different procedures used the same error rates. |
| mu.test.same.data | Tests if the same pvalues were used by different procedures. |
| mu.test.type | Tests that different procedures use the same error types. |
| Mutoss | Class Mutoss |
| mutoss.apply | Applies a function to a Mutoss object. |
| MutossMethod | Class MutossMethod |
| mutoss.models | Mutoss Models |
| mutoss.plotCI | mutoss.plotCI |
| notterman | Notterman data set |
| nparcomp | Simultaneous confidence intervals for relative contrast... |
| nparcomp.wrapper | Simultaneous confidence intervals for relative contrast... |
| onesamp.marginal | Marginal one sample test |
| oracleBH | Bejamini-Hochberg (2000) oracle linear step-up Procedure... |
| paired.marginal | Marginal paired two sample test |
| printRejected | Internal MuTossProjekt-Function |
| pval2locfdr | Strimmer et al.'s fdrtool-based local fdr |
| pval2qval | Strimmer et al.'s fdrtool-based q-values |
| pValuesPlot | A function plotting p-values... |
| Qvalue | Storey's (2001) q-value Procedure... |
| ranktruncated | Rank truncated p-Value procedure... |
| regwq | REGWQ - Ryan / Einot and Gabriel / Welsch test procedure... |
| reject | reject |
| requireLibrary | Tries to load a package. |
| rom | Rom's (1990) step-up-procedure. |
| SD | A general step-down procedure. |
| sidak | Sidak correction |
| SidakSD | Sidak-like (1987) step-down procedure |
| simulation | Simulation studies |
| snk | Student - Newman - Keuls rejective test procedure. |
| storey_pi0_est | Storey-Taylor-Siegmund estimation of pi0 (finite sample... |
| SU | A general step-up procedure. |
| SUD | A general step-up-down procedure. |
| TSBKY_pi0_est | Two-step estimation method of Benjamini, Krieger and... |
| tukey.wrapper | Tukey HSD test and simultaneous confidence intervals for all... |
| twosamp.marginal | Marginal two sample test |
| two.stage | A p-value procedure which controls the FDR for independent... |
| twostageBR | Blanchard-Roquain (2009) 2-stage adaptive step-up... |
