mvMORPH: Multivariate Comparative Tools for Fitting Evolutionary Models to Morphometric Data

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Fits multivariate (Brownian Motion, Early Burst, ACDC, Ornstein-Uhlenbeck and Shifts) models of continuous traits evolution on trees and time series.

Author
Julien Clavel, with contributions from Aaron King, and Emmanuel Paradis
Date of publication
2016-10-25 20:32:18
Maintainer
Julien Clavel <julien.clavel@hotmail.fr>
License
GPL (>= 2.0)
Version
1.0.8
URLs

View on CRAN

Man pages

aicw
Akaike weights
estim
Ancestral states reconstructions and missing value imputation...
halflife
The phylogenetic half-life for an Ornstein-Uhlenbeck process
LRT
Likelihood Ratio Test
mvBM
Multivariate Brownian Motion models of continuous traits...
mvEB
Multivariate Early Burst model of continuous traits evolution
mvLL
Multivariate (and univariate) algorithms for log-likelihood...
mvMORPH-package
Multivariate Comparative Methods for Fitting Evolutionary...
mvOU
Multivariate Ornstein-Uhlenbeck model of continuous traits...
mvOUTS
Multivariate continuous trait evolution for a stationary time...
mv.Precalc
Model parameterization for the various mvMORPH functions
mvRWTS
Multivariate Brownian motion / Random Walk model of...
mvSHIFT
Multivariate change in mode of continuous trait evolution
mvSIM
Simulation of (multivariate) continuous traits on a phylogeny
stationary
The stationary variance of an Ornstein-Uhlenbeck process

Files in this package

mvMORPH
mvMORPH/inst
mvMORPH/inst/CITATION
mvMORPH/inst/doc
mvMORPH/inst/doc/How_to_use_mvMORPH.R
mvMORPH/inst/doc/tutorial_mvMORPH.pdf
mvMORPH/inst/doc/tutorial_mvMORPH.R
mvMORPH/inst/doc/How_to_use_mvMORPH.Rmd
mvMORPH/inst/doc/How_to_use_mvMORPH.pdf
mvMORPH/inst/doc/tutorial_mvMORPH.Rmd
mvMORPH/tests
mvMORPH/tests/tests.r
mvMORPH/src
mvMORPH/src/Makevars
mvMORPH/src/kronecker.c
mvMORPH/src/mvmorph-covar-ou-sparse.c
mvMORPH/src/functions_complex.h
mvMORPH/src/spherical.c
mvMORPH/src/mvmorph_ou_mat_rpf.c
mvMORPH/src/utils.c
mvMORPH/src/mvmorph-covar-mat.c
mvMORPH/src/root2tip.c
mvMORPH/src/givens.c
mvMORPH/src/mvmorph-covar-ou.c
mvMORPH/src/covar-matrix-simmap.c
mvMORPH/src/pic_loglik_mvmorph.c
mvMORPH/src/mvmorph.h
mvMORPH/src/quadprod.c
mvMORPH/src/time_serie_expectation.c
mvMORPH/src/weight-matrix-mvmorph.c
mvMORPH/src/chol_rpf_row.c
mvMORPH/src/chol_rpf_univ.c
mvMORPH/src/covar.h
mvMORPH/NAMESPACE
mvMORPH/R
mvMORPH/R/mvBM.r
mvMORPH/R/mvBMTS.r
mvMORPH/R/estim.r
mvMORPH/R/utils.r
mvMORPH/R/fun.r
mvMORPH/R/testLRT.r
mvMORPH/R/mvmorphPrecalc.r
mvMORPH/R/mvEB.r
mvMORPH/R/zzz.r
mvMORPH/R/mvSHIFT.r
mvMORPH/R/mvSIM.r
mvMORPH/R/mvLLIK.r
mvMORPH/R/mvOUTS.r
mvMORPH/R/mvOU.r
mvMORPH/vignettes
mvMORPH/vignettes/Phylo-eigenvectors.png
mvMORPH/vignettes/How_to_use_mvMORPH.Rmd
mvMORPH/vignettes/root.png
mvMORPH/vignettes/constraints.png
mvMORPH/vignettes/tutorial_mvMORPH.Rmd
mvMORPH/vignettes/ellipses.png
mvMORPH/README.md
mvMORPH/MD5
mvMORPH/build
mvMORPH/build/vignette.rds
mvMORPH/DESCRIPTION
mvMORPH/man
mvMORPH/man/mvMORPH-package.Rd
mvMORPH/man/LRT.Rd
mvMORPH/man/halflife.Rd
mvMORPH/man/aicw.Rd
mvMORPH/man/mvLL.Rd
mvMORPH/man/mvSIM.Rd
mvMORPH/man/mvOUTS.Rd
mvMORPH/man/stationary.Rd
mvMORPH/man/mvOU.Rd
mvMORPH/man/mvBM.Rd
mvMORPH/man/mvRWTS.Rd
mvMORPH/man/estim.Rd
mvMORPH/man/mvSHIFT.Rd
mvMORPH/man/mvEB.Rd
mvMORPH/man/mv.Precalc.Rd