plot.cp | R Documentation |
This function generates a plot an object of class score.contribution
## S3 method for class 'cp' plot(x, ncomp = "Overall", ...)
x |
|
ncomp |
the number of components to include the graph output. |
... |
additional arguments. Currently ignored. |
A graph of the score contributions for ScoreContrib
objects.
The output of plot
is a graph of score contributions for the specified observation(s).
Nelson Lee Afanador (nelson.afanador@mvdalab.com)
data(Penta) mod1 <- plsFit(log.RAI ~., scale = TRUE, data = Penta[, -1], ncomp = 2, method = "bidiagpls", validation = "loo") Score.Contributions1 <- ScoreContrib(mod1, obs1 = 1, obs2 = 3) plot(Score.Contributions1, ncomp = 1) ## Not run: data(Penta) ## Number of bootstraps set to 300 to demonstrate flexibility ## Use a minimum of 1000 (default) for results that support bootstraping mod2 <- plsFit(log.RAI ~., scale = TRUE, data = Penta[, -1], ncomp = 2, validation = "oob", boots = 300) Score.Contributions2 <- ScoreContrib(mod2, obs1 = 1, obs2 = 3) plot(Score.Contributions2, ncomp = 1) ## End(Not run) #PCA Model pc1 <- pcaFit(Penta[, -1], ncomp = 3) Score.Contributions1 <- ScoreContrib(mod1, obs1 = 1, obs2 = 3) plot(Score.Contributions1, ncomp = 1)
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