nat.templatebrains: NeuroAnatomy Toolbox ('nat') Extension for Handling Template Brains
Version 0.8.2

Extends package 'nat' (NeuroAnatomy Toolbox) by providing objects and functions for handling template brains.

Browse man pages Browse package API and functions Browse package files

AuthorGregory Jefferis [aut, cre], James Manton [aut]
Date of publication2017-04-22 22:24:52 UTC
MaintainerGregory Jefferis <jefferis@gmail.com>
LicenseGPL-3
Version0.8.2
URL https://github.com/jefferislab/nat.templatebrains
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("nat.templatebrains")

Man pages

add_reg_folders: Set or list local folders containing registrations for...
add_reglist: Add reglist object describing a bridging/mirroring...
allreg_dataframe: Make data.frame with details of all registrations
as.templatebrain: Use image file or other object to initialise template brain
bridging_sequence: Find sequence of one or more bridging registrations
display_slice: Display an image slice in 3D
download_reg_repo: Download and register git repository containing registrations
FCWB.demo: Sample template brain: FlyCircuit Whole Brain
local_reg_dir_for_url: Standard local checkout location for extra registration...
mirror_brain: Mirror 3D object around a given axis, optionally using a...
nat.templatebrains-package: NeuroAnatomy Toolbox add-on package for handling template...
plot3d.templatebrain: Plot 3D surface of a template brain
regtemplate: Get or set the registration template space in which an object...
shortest_bridging_seq: Make or query connected graph of bridging registrations
templatebrain: Construct templatebrain object for an image registration...
templatebrain-meths: Template brain methods
update_reg_repos: Update local copy of git repository containing registrations
xform_brain: Transform 3D object between template brains

Functions

FCWB.demo Man page
add_reg_folders Man page Source code
add_reglist Man page Source code
allreg_dataframe Man page Source code
as.character.templatebrain Man page Source code
as.im3d.templatebrain Man page Source code
as.templatebrain Man page Source code
as.templatebrain.character Man page Source code
as.templatebrain.im3d Man page Source code
boundingbox.templatebrain Man page Source code
bridging_graph Man page Source code
bridging_reg Source code
bridging_sequence Man page Source code
dim.templatebrain Man page Source code
display_slice Man page Source code
display_slice.default Source code
display_slice.templatebrain Source code
download_reg_repo Man page Source code
extra_reg_folders Man page Source code
find_reg Source code
get_templatebrain Source code
git_pull_helper Source code
is.templatebrain Man page Source code
local_reg_dir_for_url Man page Source code
make_reg_url Source code
mirror_brain Man page Source code
mirror_reg Source code
nat.templatebrains Man page
nat.templatebrains-package Man page
onLoad Source code
origin.templatebrain Man page Source code
plot3d.templatebrain Man page Source code
print.templatebrain Man page Source code
regtemplate Man page Source code
regtemplate<- Man page
reset_cache Source code
shortest_bridging_seq Man page Source code
simplify_bridging_sequence Source code
templatebrain Man page Source code
templatebrain-meths Man page
update_reg_repos Man page Source code
voxdims.templatebrain Man page Source code
xform_brain Man page Source code

Files

inst
inst/images
inst/images/FCWB.nhdr
tests
tests/testthat.R
tests/testthat
tests/testthat/test-transformation.r
tests/testthat/test-template-brain-data.r
tests/testthat/testdata
tests/testthat/testdata/allreg_dataframe.rds
tests/testthat/test-reg_repos.R
tests/testthat/test-regtemplate.R
NAMESPACE
NEWS
data
data/FCWB.demo.R
R
R/display_slice.R
R/reg_repos.R
R/plotting.R
R/transformation.R
R/templatebrain.R
R/PACKAGE.R
R/regtemplate.R
R/zzz.R
README.md
MD5
DESCRIPTION
man
man/xform_brain.Rd
man/mirror_brain.Rd
man/download_reg_repo.Rd
man/FCWB.demo.Rd
man/as.templatebrain.Rd
man/display_slice.Rd
man/templatebrain.Rd
man/bridging_sequence.Rd
man/add_reg_folders.Rd
man/regtemplate.Rd
man/shortest_bridging_seq.Rd
man/add_reglist.Rd
man/local_reg_dir_for_url.Rd
man/templatebrain-meths.Rd
man/update_reg_repos.Rd
man/plot3d.templatebrain.Rd
man/nat.templatebrains-package.Rd
man/allreg_dataframe.Rd
nat.templatebrains documentation built on May 19, 2017, 7:12 a.m.