nat.templatebrains: NeuroAnatomy Toolbox ('nat') Extension for Handling Template Brains

Extends package 'nat' (NeuroAnatomy Toolbox) by providing objects and functions for handling template brains.

Author
James Manton and Gregory Jefferis
Date of publication
2015-12-07 10:38:26
Maintainer
James Manton <ajd.manton@googlemail.com>
License
GPL-3
Version
0.6.2

View on CRAN

Man pages

add_reg_folders
Set or list local folders containing registrations for...
allreg_dataframe
Make data.frame with details of all registrations
as.templatebrain
Use image file or other object to initialise template brain
bridging_sequence
Find sequence of one or more bridging registrations
display_slice
Display an image slice in 3D
download_reg_repo
Download and register git repository containing registrations
FCWB.demo
Sample template brain: FlyCircuit Whole Brain
local_reg_dir_for_url
Standard local checkout location for extra registration...
mirror_brain
Mirror 3D object around a given axis, optionally using a...
nat.templatebrains-package
NeuroAnatomy Toolbox add-on package for handling template...
plot3d.templatebrain
Plot 3D surface of a template brain
shortest_bridging_seq
Make or query connected graph of bridging registrations
templatebrain
Construct templatebrain object for an image registration...
templatebrain-meths
Template brain methods
update_reg_repos
Update local copy of git repository containing registrations
xform_brain
Transform 3D object between template brains

Files in this package

nat.templatebrains
nat.templatebrains/inst
nat.templatebrains/inst/images
nat.templatebrains/inst/images/FCWB.nhdr
nat.templatebrains/tests
nat.templatebrains/tests/test-all.r
nat.templatebrains/tests/testthat
nat.templatebrains/tests/testthat/test-transformation.r
nat.templatebrains/tests/testthat/test-template-brain-data.r
nat.templatebrains/tests/testthat/testdata
nat.templatebrains/tests/testthat/testdata/allreg_dataframe.rds
nat.templatebrains/tests/testthat/test-reg_repos.R
nat.templatebrains/NAMESPACE
nat.templatebrains/NEWS
nat.templatebrains/data
nat.templatebrains/data/FCWB.demo.R
nat.templatebrains/R
nat.templatebrains/R/display_slice.R
nat.templatebrains/R/reg_repos.R
nat.templatebrains/R/plotting.R
nat.templatebrains/R/transformation.R
nat.templatebrains/R/templatebrain.R
nat.templatebrains/R/PACKAGE.R
nat.templatebrains/R/zzz.R
nat.templatebrains/README.md
nat.templatebrains/MD5
nat.templatebrains/DESCRIPTION
nat.templatebrains/man
nat.templatebrains/man/xform_brain.Rd
nat.templatebrains/man/mirror_brain.Rd
nat.templatebrains/man/download_reg_repo.Rd
nat.templatebrains/man/FCWB.demo.Rd
nat.templatebrains/man/as.templatebrain.Rd
nat.templatebrains/man/display_slice.Rd
nat.templatebrains/man/templatebrain.Rd
nat.templatebrains/man/bridging_sequence.Rd
nat.templatebrains/man/add_reg_folders.Rd
nat.templatebrains/man/shortest_bridging_seq.Rd
nat.templatebrains/man/local_reg_dir_for_url.Rd
nat.templatebrains/man/templatebrain-meths.Rd
nat.templatebrains/man/update_reg_repos.Rd
nat.templatebrains/man/plot3d.templatebrain.Rd
nat.templatebrains/man/nat.templatebrains-package.Rd
nat.templatebrains/man/allreg_dataframe.Rd