Man pages for neonUtilities
Utilities for Working with NEON Data

addFilenameAdd column to data containing name of file
assignClassesAssign correct column classes
byEventSIMGet site management data by event type.
byFileAOPSerially download all AOP files for a given site, year, and...
byTileAOPDownload AOP tiles overlapping specified coordinates for a...
checkVarFieldsCheck for differences in field names among variables files
chem_bundlesBundled chemistry data product information
cleanUpClean up folder after stacking
convByteSizeConvert a number of bytes into megabytes or gigabytes
datasetQueryQuery the query endpoint of the NEON API and create an arrow...
dateConvertConvert date stamps from character
eddyStampCheckConvert date stamps from character and check for only one...
findDatatablesFind data tables
findTablesByFormatFind unique data tables in dataset
findTablesUniqueFind unique data tables in dataset
footRasterExtract eddy covariance footprint data from HDF5 format
formatReadmeGet a genericized version of a readme file by removing info...
getAPIGet the data from API
getAPIHeadersGet only headers from API
getAttributesExtract attributes from eddy covariance H5 files
getAvgGet a list of the available averaging intervals for a data...
getCitationGet a Bibtex citation for NEON data with a DOI, or generate a...
getDatatableGet NEON data table
getEddyLogGet the full issue log set for the SAE bundle
getFileUrlsGet and store the file names, S3 URLs, file size, and...
getHorVerGet the horizontal and vertical location indices for a given...
getIssueLogGet the issue log for a specific data product
getNeonDOIGet either a list of NEON DOIs, or the DOI for a specific...
getPackageGet NEON data package
getProductInfoGet NEON data product information
getProductSensorsGet data product-sensor relationships
getReadmePublicationDateScrape the publication date from each ReadMe file
getRecentPublicationReturns the most recent files for those that do not need...
getTaxonTableGet NEON taxon table
getTileUrlsGet and store the file names, S3 URLs, file size, and...
getTimeIndexGet a list of the available time intervals for a data product
getTitleGet NEON data product title
getVariablesGet correct data types
getVariablesEddyGet variable names and units from SAE H5 files
getVarsEddyExtract list of eddy covariance tables from HDF5 files
getZipUrlsGet and store the file names, S3 URLs, file size, and...
listFilesInZipGet a data frame with the names of all files within a zipped...
listZipfilesGet all zip file names within a zipped NEON data package
loadByProductGet files from NEON API, stack tables, and load into the...
makePosColumnsCreate position (horizontal and vertical) columns
other_bundlesBundled vegetation and sediment data product information
queryFilesGet a list of data files from the query endpoint of the NEON...
quietMessagesWill suppress all output messages, while retaining the output...
readTableNEONRead a NEON data table with correct data types for each...
removeSrfDupsAggregate science review flag files to unique records
schemaAllStringsCreate an arrow schema with every variable coded as a string...
schemaAllStringsFromSetCreate an arrow schema with every variable coded as a string...
schemaFromVarCreate an arrow schema from a NEON variables file.
shared_aquaticTerrestrial-aquatic shared data information
shared_flightsFlight coverage information
stackByTableJoin data files in a zipped NEON data package by table type
stackDataFilesArrowJoin data files in a unzipped NEON data package by table type
stackEddyExtract eddy covariance data from HDF5 format
stackFrameFilesStack data frame (per sample) files
stackFromStoreSelect files from a stored set of NEON data, created by...
table_typesPublication table information
timeStampSetGenerate a consensus set of time stamps from a set of input...
tokenCheckCheck for expired API token
tokenDateGet expiration date for a NEON API token
transformFileToGeoCSVTransform NEON CSV file to GeoCSV
unzipZipfileParallelUnzip a zip file either at just the top level or recursively...
zipsByProductGet files from NEON API to feed the stackByTable() function
zipsByURIGet files from NEON ECS Bucket using URLs in stacked data
neonUtilities documentation built on Aug. 8, 2025, 6:31 p.m.