get_dataset.default: Obtain dataset information from the Neotoma Paleoecological...

In neotoma: Access to the Neotoma Paleoecological Database Through R

Description

A function to access the Neotoma API and return datasets corresponding to the parameters defined by the user.

Usage

## Default S3 method:
get_dataset(x, datasettype, piid, altmin, altmax, loc,
  gpid, taxonids, taxonname, ageold, ageyoung, ageof, subdate)

Arguments

x	A numeric value corresponding to the site ID.
datasettype	A character string corresponding to one of the allowed dataset types in the Neotoma Database. Allowed types include: "geochronologic", "loss-on-ignition", "pollen", "plant macrofossils", "vertebrate fauna", "mollusks", and "pollen surface sample".
piid	Numeric value for the Principle Investigator's ID number.
altmin	Numeric value indicating the minimum altitude for the site (can be used alone or with altmax).
altmax	Numeric value indicating the maximum altitude for the site (can be used alone or with altmin).
loc	A numeric vector c(lonW, latS, lonE, latN) representing the bounding box within which to search for sites. The convention here is to use negative values for longitudes west of Greenwich or longitudes south of the equator
gpid	A character string or numeric value, must correspond to a valid geopolitical identity in the Neotoma Database. Use get.tables('GeoPoliticalUnits') for a list of acceptable values, or link here: http://api.neotomadb.org/apdx/geopol.htm
taxonids	A numeric identifier for the taxon. See get_table and use get_tables('Taxa') for a list of acceptable values.
taxonname	A character string corresponding to a valid taxon identity in the Neotoma Database. See get_table and use get_table('Taxa') for a list of acceptable values.
ageold	The oldest date acceptable for the search (in years before present).
ageyoung	The youngest date acceptable for the search.
ageof	If a taxon ID or taxon name is defined this parameter must be set to "taxon", otherwise it may refer to "sample", in which case the age bounds are for any samples within datasets or "dataset" if you want only datasets that are within the bounds of ageold and ageyoung.
subdate	Date of dataset submission, either YYYY-MM-DD or MM-DD-YYYY.

neotoma documentation built on May 2, 2019, 1:10 p.m.