Files in neotoma2

Working with the Neotoma Paleoecology Database

NEWS.md README.md R/chronology-methods.R R/set_site.R R/set_sample.R R/plotLeaflet.R R/parseURL.R R/dataset-methods.R R/parse_body.R R/pingNeotoma.r R/get_stats.R R/set_collunit.R R/set_publications.R R/build_collunit.R R/getids.r R/utils-pipe.R R/get_downloads.R R/check_args.R R/toWide.R R/set_chronology.R R/specimen-methods.R R/get_publications.R R/toJSON.R R/use_na.R R/publication-methods.R R/neotoma-methods.R R/build_dataset.R R/clean.R R/taxa.R R/cleanNULL.R R/build_sample.R R/build_chron.R R/02_genericDefinitions.R R/collunits-methods.R R/get_specimens.R R/get_datasets.R R/pubAuthors.R R/get_contacts.R R/set_dataset.R R/parse_location.R R/contact-methods.R R/fix_nulls.r R/set_server.R R/testNull.R R/get_manual.R R/samples-methods.R R/chroncontrols.R R/specimens.R R/build_specimen.R R/filter.R R/site-methods.R R/set_contacts.R R/build_site.R R/samples.R R/get_table.R R/check_contacts.R R/01_classDefinitions.R R/subset-methods.R R/get_sites.R inst/doc/neotoma2-package.R inst/doc/neotoma2-package.Rmd tests/testthat.R tests/testthat/test_samples.R tests/testthat/test_toWide.R tests/testthat/test_generaltests.R tests/testthat/test_download.R tests/testthat/test_sites.R tests/testthat/test_examples.R tests/testthat/test-parse_location.R tests/testthat/test_check_contacts.R tests/testthat/test_c.R tests/testthat/test_filter.R tests/testthat/test_datasets.R tests/testthat/test-set_server.R tests/testthat/test_methods.R tests/testthat/test-get_manual.R tests/testthat/test_specimens.R tests/testthat/test_setsample.R tests/testthat/test_setsite.r tests/testthat/test-ping.R tests/testthat/test_chroncontrols.R tests/testthat/test_clean.R tests/testthat/test_plotLeaflet.r tests/testthat/test-get_table.R tests/testthat/test-toJSON.R tests/testthat/test-get_contacts.R vignettes/neotoma2-package.Rmd man/doi-publication-method.Rd man/sub-sub-specimens-numeric-method.Rd man/taxa-collunits-method.Rd man/as.data.frame-authors-method.Rd man/c-contact-method.Rd man/write.csv-datasets-method.Rd man/as.data.frame-chronologies-method.Rd man/cite_data-site-method.Rd man/toJSON.Rd man/sub-sub-contacts-numeric-method.Rd man/set_dataset.Rd man/get_publications.default.Rd man/get_sites.numeric.Rd man/doi-site-method.Rd man/sub-sub-datasets-numeric-method.Rd man/plot-sites-method.Rd man/cash-chronology-method.Rd man/chroncontrols-sites-method.Rd man/sub-subset-collunits-ANY-ANY-ANY-method.Rd man/parse_site.Rd man/write.csv-sites-method.Rd man/specimens-sites-method.Rd man/as.data.frame-collunits-method.Rd man/set_site.Rd man/specimen-class.Rd man/chronology-class.Rd man/selectMatch-publication-numeric-method.Rd man/cash-samples-method.Rd man/show-datasets-method.Rd man/names-publication-method.Rd man/sub-sub-sites-numeric-method.Rd man/as.data.frame-specimens-method.Rd man/get_table.Rd man/selectMatch-publication-logical-method.Rd man/names-publications-method.Rd man/pingNeotoma.Rd man/length-chronologies-method.Rd man/samples-collunit-method.Rd man/show-dataset-method.Rd man/doi.Rd man/taxa-sites-method.Rd man/get_publications.publication.Rd man/getids.site.Rd man/set_sample.Rd man/cash-collunit-method.Rd man/showMatch.Rd man/coordinates-sites-method.Rd man/write.csv-chronologies-method.Rd man/get_stats.Rd man/getids.Rd man/subset-specimen-character-ANY-ANY-method.Rd man/chroncontrols-site-method.Rd man/showMatch-publication-method.Rd man/get_specimens.sites.Rd man/missingOrNULL-class.Rd man/samples.Rd man/set_server.Rd man/names-site-method.Rd man/datasets-collunits-method.Rd man/get_manual.Rd man/build_specimen.Rd man/authors-class.Rd man/toJSON-sites-method.Rd man/chronologies-class.Rd man/getids.collunit.Rd man/as.data.frame-sites-method.Rd man/get_publications.numeric.Rd man/build_chron.Rd man/cash-sites-method.Rd man/as.data.frame-site-method.Rd man/get_downloads.character.Rd man/subset-dataset-numeric-ANY-ANY-method.Rd man/names-contact-method.Rd man/set_contact.Rd man/sample-class.Rd man/sites-class.Rd man/cite_data.Rd man/length-sites-method.Rd man/sub-specimens-numeric-method.Rd man/show-publications-method.Rd man/collunits-site-method.Rd man/cash-set-specimen-method.Rd man/get_sites.Rd man/get_downloads.sites.Rd man/chronologies-sites-method.Rd man/length-specimens-method.Rd man/get_datasets.numeric.Rd man/get_specimens.default.Rd man/names-collunit-method.Rd man/cash-chronologies-method.Rd man/samples-collunits-method.Rd man/get_downloads.numeric.Rd man/c-specimens-method.Rd man/collunits.Rd man/taxa.Rd man/cash-contact-method.Rd man/specimens-site-method.Rd man/show-sites-method.Rd man/get_contacts.numeric.Rd man/sub-sub-publications-numeric-method.Rd man/subset-site-character-ANY-ANY-method.Rd man/datasets-collunit-method.Rd man/cash-site-method.Rd man/show-collunits-method.Rd man/show-site-method.Rd man/get_datasets.site.Rd man/publication-class.Rd man/getids.sites.Rd man/get_specimens.Rd man/show-specimens-method.Rd man/get_contacts.default.Rd man/show-collunit-method.Rd man/as.list-sites-method.Rd man/as.data.frame-specimen-method.Rd man/datasets.Rd man/cash-publication-method.Rd man/datasets-class.Rd man/set_default.Rd man/summary-sites-method.Rd man/cash-contacts-method.Rd man/sub-sites-numeric-method.Rd man/cash-set-site-method.Rd man/subset-collunit-character-ANY-ANY-method.Rd man/author-class.Rd man/cash-sample-method.Rd man/sub-datasets-numeric-method.Rd man/build_sites.Rd man/get_publications.publications.Rd man/set_default-chronologies-method.Rd man/names-specimen-method.Rd man/specimens-collunits-method.Rd man/plotLeaflet-site-method.Rd man/show-publication-method.Rd man/newURL.Rd man/c-publications-method.Rd man/set_publications.Rd man/show-specimen-method.Rd man/chronologies-collunit-method.Rd man/c-sites-method.Rd man/datasets-sites-method.Rd man/cash-datasets-method.Rd man/cash-collunits-method.Rd man/plotLeaflet.Rd man/pipe.Rd man/cash-set-chronology-method.Rd man/show-contacts-method.Rd man/as.data.frame-publications-method.Rd man/get_sites.default.Rd man/sub-subset-datasets-ANY-ANY-ANY-method.Rd man/c-chronologies-method.Rd man/sub-subset-publications-ANY-ANY-ANY-method.Rd man/c-datasets-method.Rd man/get_sites.sites.Rd man/length-datasets-method.Rd man/set_chronology.Rd man/contacts-class.Rd man/repositories-class.Rd man/doi-sites-method.Rd man/check_contacts.contacts.Rd man/get_datasets.default.Rd man/c-collunits-method.Rd man/build_collunits.Rd man/repository-class.Rd man/get_datasets.Rd man/selectMatch.Rd man/specimens-class.Rd man/chronologies-site-method.Rd man/cash-set-dataset-method.Rd man/as.data.frame-dataset-method.Rd man/build_dataset.Rd man/write.csv-collunits-method.Rd man/cash-specimen-method.Rd man/write.csv-specimens-method.Rd man/sub-collunits-numeric-method.Rd man/site-class.Rd man/specimens.Rd man/sub-subset-sites-ANY-ANY-ANY-method.Rd man/subset-site-numeric-ANY-ANY-method.Rd man/cash-set-collunit-method.Rd man/collunits-sites-method.Rd man/length-collunits-method.Rd man/as.data.frame-chronology-method.Rd man/coordinates.Rd man/filter.sites.Rd man/cash-specimens-method.Rd man/sub-subset-specimens-ANY-ANY-ANY-method.Rd man/get_publications.Rd man/datasets-site-method.Rd man/c-missingOrNULL-method.Rd man/subset-collunit-numeric-ANY-ANY-method.Rd man/contact-class.Rd man/add_chronology.Rd man/get_downloads.Rd man/sub-sub-chronologies-numeric-method.Rd man/sub-site-numeric-method.Rd man/show-contact-method.Rd man/toWide.Rd man/collunits-class.Rd man/samples-site-method.Rd man/get_specimens.numeric.Rd man/cite_data-sites-method.Rd man/parseURL.Rd man/set_collunit.Rd man/add_chronology-collunit-chronology-data.frame-method.Rd man/as.data.frame-contacts-method.Rd man/check_contacts.Rd man/as.data.frame-publication-method.Rd man/filter.Rd man/chronologies-collunits-method.Rd man/names-dataset-method.Rd man/length-publications-method.Rd man/cash-dataset-method.Rd man/c-contacts-method.Rd man/taxa-site-method.Rd man/plotLeaflet-sites-method.Rd man/get_datasets.sites.Rd man/samples-sites-method.Rd man/collunit-class.Rd man/check_args.Rd man/getids.collunits.Rd man/build_sample.Rd man/sub-site-character-method.Rd man/get_contacts.Rd man/subset-dataset-character-ANY-ANY-method.Rd man/sub-sub-collunits-numeric-method.Rd man/as.data.frame-contact-method.Rd man/chroncontrols.Rd man/taxa-collunit-method.Rd man/publications-class.Rd man/as.data.frame-datasets-method.Rd man/subset-specimen-numeric-ANY-ANY-method.Rd man/parsebody.Rd man/specimens-collunit-method.Rd man/length-samples-method.Rd man/sub-sub-samples-numeric-method.Rd man/samples-class.Rd man/as.data.frame-collunit-method.Rd man/chronologies.Rd man/dataset-class.Rd