Man pages for netgwas
Network-Based Genome Wide Association Studies
| buildMap | linkage group detection and ordering markers for class... |
| cal.pos | Estimate genetic map distances |
| cross2netgwas | 'cross' object to 'netgwas' data frame |
| cutoffs | Cut-points |
| CviCol | Arabidopsis thaliana genotype data |
| detect.err | Identiying likely genotyping error |
| lower.upper | Calculates lower band and upper band |
| netgwas2cross | netgwasmap object to cross object |
| netgwas-internal | netgwas-internal |
| netgwas-package | Network Based Genome Wide Association Studies |
| netmap | Constructing linkage map for diploids and polyploids |
| netphenogeno | Reconstructs conditional dependence network among genetic... |
| netsnp | Reconstructs intra- and inter- chromosomal conditional... |
| plot.netgwas | plot for S3 class "netgwas" |
| plot.netgwasmap | plot for S3 class "netgwasmap" |
| plot.select | Plot function for S3 class "select" |
| plot.simGeno | Plot function for 'S3' class '"simgeno"' |
| print.netgwas | Print function for S3 class "netgwas" |
| print.netgwasmap | Print function for S3 class "netgwasmap" |
| print.select | Print function for S3 class "select" |
| print.simGeno | Print function for S3 class "simgeno" |
| R.approx | The expectation of covariance using approximation method |
| R.gibbs | The expectation of covariance matrix using Gibbs sampling |
| selectnet | Model selection |
| simGeno | Generate genotype data based on Gaussian copula |
| simRIL | Generate genotype data of RIL |
| tetraPotato | tetraploid potato genotype data |
| thaliana | Arabidopsis thaliana phenotype and genotype data |
