simRIL: Generate genotype data of RIL

In netgwas: Network-Based Genome Wide Association Studies

Generate genotype data of RIL

Description

Generating genotype data from a recombinant inbred line (RIL) population.

Usage

simRIL( d = 25, n = 200, g = 5, cM = 100, selfing=2 )

Arguments

d	The number of markers per chromosome. The default value is 25.
n	The number of sample size (observations). The default value is 200.
g	The number of linkage groups (chromosomes). The default value is 5.
cM	The length of each chromosome based on centiMorgan.
selfing	The number of selfing in RIL population.

Value

data	The generated RIL genotype data as an n by (d x g) matrix.
map	The genetic map of the data.

Author(s)

Pariya Behrouzi
Maintainer: Pariya Behrouzi <[e-mail]>

See Also

netmap, netsnp, and netgwas-package

Examples

#genome-like graph structure
ril <- simRIL(g = 5, d = 25, cM = 100, n = 200, selfing = 2)
geno <- ril$data; image(geno, xlab= "individuals", ylab="markers")
map <- ril$map 

netgwas documentation built on Aug. 7, 2023, 5:10 p.m.