networkTomography: Tools for network tomography

networkTomography implements the methods developed and evaluated in Blocker and Airoldi (2011) and Airoldi and Blocker (2012). These include the authors' own dynamic multilevel model with calibration based upon a Gaussian state-space model in addition to implementations of the methods of Tebaldi & West (1998; Poisson-Gamma model with MCMC sampling), Zhang et al. (2002; tomogravity), Cao et al. (2000; Gaussian model with mean-variance relation), and Vardi (1996; method of moments). Data from the 1router network of Cao et al. (2000), the Abilene network of Fang et al. (2007), and the CMU network of Blocker and Airoldi (2011) are included for testing and reproducibility.

Install the latest version of this package by entering the following in R:
install.packages("networkTomography")
AuthorAlexander W Blocker, Paul Koullick, Edoardo Airoldi
Date of publication2014-01-10 07:28:23
MaintainerAlexander W Blocker <ablocker@gmail.com>
LicenseLGPL-2
Version0.3
https://github.com/awblocker/networkTomography

View on CRAN

Man pages

abilene: Abilene data from Fang et al. (2007)

agg: Function to aggregate results from matrix to matrix

bayesianDynamicFilter: Function for inference with multilevel state-space model

bell.labs: Bell Labs 1router data from Cao et al. (2000)

buildPrior: Construct prior from calibration model estimates

buildRoutingMat: Build routing matrices for linked star topologies; that is, a...

buildRoutingMatrix: Build routing matrix from table of link relationships

buildStarMat: Build routing matrix for star network topology

calcN: Compute total traffic from a particular time.

calibration_ssm: Estimation for the linear SSM calibration model of Blocker &...

cmu: CMU data from Blocker & Airoldi (2011)

decomposeA: Compute pivoted decomposition of routing matrix A into...

diag_ind: Make vector of 1-dimensional diagonal indices for square...

diag_mat: Make diagonal matrix from vector

dobj.dxt.tomogravity: Analytic gradient of objective function of Zhang et al. 2003

getActive: Check for deterministically-known OD flows at single time

getSrcDstIndices: Find indices of source and destination for each...

grad_iid: Compute analytic gradient of Q-function for locally IID EM...

grad_smoothed: Compute analytic gradient of Q-function for smoothed EM...

gravity: Run tomogravity estimation on complete time series of...

gravity.fit: Gravity estimation for a single time point

ipfp: Function to run basic IPFP (iterative proportional fitting...

llCalibration: Evaluate marginal log-likelihood for calibration SSM

locally_iid_EM: Run EM algorithm to obtain MLE for locally IID model of Cao...

m_estep: Compute conditional expectations for EM algorithms of Cao et...

mle_filter: Filtering & smoothing at MLE for calibration SSM

move_step: Move step of sample-resample-move algorithm for multilevel...

obj.tomogravity: Objective function of Zhang et al. 2003

phi_init: Simple initialization for phi in model of Cao et al. (2000)

Q_iid: Q function for locally IID EM algorithm of Cao et al. (2000)

Q_smoothed: Q function for smoothed EM algorithm of Cao et al. (2000)

R_estep: Compute conditional covariance matrix for EM algorithms of...

smoothed_EM: Run EM algorithm to obtain MLE (single time) for smoothed...

strphour: Convert time string to decimal hour

thin: Thinning vector of indices for MCMC

tomogravity: Run tomogravity estimation on complete time series of...

tomogravity.fit: Tomogravity estimation for a single time point using L-BFGS-B

twMCMC: Function to run MCMC sampling for model of Tebaldi & West...

vardi.algorithm: Run algorithm of Vardi (1996) given B and S matrices

vardi.compute.BS: Compute B and S matrices in algorithm of Vardi (1996)

vardi.iteration: Execute single iteration for algorithm of Vardi (1996)

Functions

abilene Man page
agg Man page
bayesianDynamicFilter Man page
bell.labs Man page
buildPrior Man page
buildRoutingMat Man page
buildRoutingMatrix Man page
buildStarMat Man page
calcN Man page
calibration_ssm Man page
cmu Man page
decomposeA Man page
diag_ind Man page
diag_mat Man page
dobj.dxt.tomogravity Man page
getActive Man page
getSrcDstIndices Man page
grad_iid Man page
grad_smoothed Man page
gravity Man page
gravity.fit Man page
ipfp Man page
llCalibration Man page
locally_iid_EM Man page
m_estep Man page
mle_filter Man page
move_step Man page
obj.tomogravity Man page
phi_init Man page
Q_iid Man page
Q_smoothed Man page
R_estep Man page
smoothed_EM Man page
strphour Man page
thin Man page
tomogravity Man page
tomogravity.fit Man page
twMCMC Man page
vardi.algorithm Man page
vardi.compute.BS Man page
vardi.iteration Man page

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.