nimble: Flexible BUGS-Compatible System for Hierarchical Statistical Modeling and Algorithm Development

Flexible application of algorithms to models specified in the BUGS language. Algorithms can be written in the NIMBLE language and made available to any model.

AuthorPerry de Valpine, Christopher Paciorek, Daniel Turek, Cliff Anderson- Bergman, Duncan Temple Lang
Date of publication2016-12-14 23:15:44
MaintainerChristopher Paciorek <paciorek@stat.berkeley.edu>
LicenseBSD_3_clause + file LICENSE
Version0.6-3
http://r-nimble.org

View on CRAN

Man pages

asRow: Turn a numeric vector into a single-row or single-column...

autoBlock: Automated parameter blocking procedure for efficient MCMC...

BUGSdeclClass-class: BUGSdeclClass contains the information extracted from one...

buildAuxiliaryFilter: Create an auxiliary particle filter algorithm to estimate...

buildBootstrapFilter: Create a bootstrap particle filter algorithm to estimate...

buildEnsembleKF: Create an Ensemble Kalman filter algorithm to sample from...

buildLiuWestFilter: Create a Liu and West particle filter algorithm.

buildMCEM: Builds an MCEM algorithm from a given NIMBLE model

buildMCMC: Create an MCMC function, from an MCMCconf object

Categorical: The Categorical Distribution

checkInterrupt: Check for interrupt (e.g. Ctrl-C) during nimbleFunction...

CmodelBaseClass-class: Class 'CmodelBaseClass'

CnimbleFunctionBase-class: Class 'CnimbleFunctionBase'

codeBlockClass-class: Class 'codeBlockClass'

combine_MCMC_comparison_results: Combine multiple objects returned by compareMCMCs

compareMCMCs: Run multiple MCMCs (packages or NIMBLE cases) for multiple...

compileNimble: compile NIMBLE models and nimbleFunctions

configureMCMC: Build the MCMCconf object for construction of an MCMC object

Constraint: Constraint calculations in NIMBLE

decide: Makes the Metropolis-Hastings acceptance decision, based upon...

decideAndJump: Creates a nimbleFunction for executing the...

declare: Explicitly declare a variable in run-time code of a...

deregisterDistributions: Remove user-supplied distributions from use in NIMBLE BUGS...

Dirichlet: The Dirichlet Distribution

distributionInfo: Get information about a distribution

Exponential: The Exponential Distribution

getBound: Get value of bound of a stochastic node in a model

getBUGSexampleDir: Get the directory path to one of the classic BUGS examples...

getDefinition: Get nimbleFunction definition

getLoadingNamespace: return the namespace in which a nimbleFunction is being...

getNimbleOption: Get NIMBLE Option

getParam: Get value of a parameter of a stochastic node in a model

getsize: Returns number of rows of modelValues

identityMatrix: Create an Identity matrix

initializeModel: Performs initialization of nimble model node values and log...

Interval: Interval calculations

is.nf: check if a nimbleFunction

makeBoundInfo: Make an object of information about a model-bound pairing for...

make_MCMC_comparison_pages: Make html pages summarizing results from compareMCMCs

makeParamInfo: Make an object of information about a model-parameter pairing...

MCMCconf-class: Class 'MCMCconf'

MCMCsuite: Executes multiple MCMC algorithms and organizes results.

MCMCsuiteClass-class: Class 'MCMCsuiteClass'

modelBaseClass-class: Class 'modelBaseClass'

modelDefClass-class: Class for NIMBLE model definition

modelValues: Create a NIMBLE modelValues Object

modelValuesBaseClass-class: Class 'modelValuesBaseClass'

modelValuesConf: Create the confs for a custom NIMBLE modelValues object

Multinomial: The Multinomial Distribution

MultivariateNormal: The Multivariate Normal Distribution

Multivariate-t: The Multivariate t Distribution

nfMethod: access (call) a member function of a nimbleFunction

nfVar: Access or set a member variable of a nimbleFunction

nimArray: Creates a array object of arbitrary dimension for use in...

nimbleCode: Turn BUGS model code into an object for use in 'nimbleModel'...

nimbleFunction: create a nimbleFunction

nimbleFunctionBase-class: Class 'nimbleFunctionBase'

nimbleFunctionList-class: Create a list of nimbleFunctions

nimbleFunctionVirtual: create a virtual nimbleFunction, a base class for other...

nimble-internal: Functions and Classes Internal to NIMBLE

nimble-math: Mathematical functions for BUGS and nimbleFunction...

nimbleModel: Create a NIMBLE model from BUGS code

nimbleOptions: NIMBLE Options Settings

nimCat: cat function for use in nimbleFunctions

nimCopy: Copying function for NIMBLE

nimDim: return sizes of an object whether it is a vector, matrix or...

nimInteger: Creates an integer vector for use in NIMBLE DSL functions

nimMatrix: Creates a matrix object for use in NIMBLE DSL functions

nimNumeric: Creates a numeric vector for use in NIMBLE DSL functions

nimPrint: print function for use in nimbleFunctions

nimStop: Halt execution of a nimbleFunction function method. Part of...

nodeFunctions: calculate, calculateDiff, simulate, or get the current log...

rankSample: Generates a weighted sample (with replacement) of ranks

readBUGSmodel: Create a NIMBLE BUGS model from a variety of input formats,...

registerDistributions: Add user-supplied distributions for use in NIMBLE BUGS models

rename_MCMC_comparison_method: Rename a method in an object returned by compareMCMCs

reshape_comparison_results: Convert comparison results to a more general format

resize: Resizes a modelValues object

Rmatrix2mvOneVar: Set values of one variable of a modelValues object from an R...

RmodelBaseClass-class: Class 'RmodelBaseClass'

runMCMC: Run one or more chains of an MCMC algorithm and extract...

run.time: Time execution of NIMBLE code

samplers: MCMC Sampling Algorithms

setAndCalculate: Creates a nimbleFunction for setting the values of one or...

setAndCalculateOne: Creates a nimbleFunction for setting the value of a scalar...

setSize: set the size of a numeric variable in NIMBLE

setupOutputs: Explicitly declare objects created in setup code to be...

simNodes: Basic nimbleFunctions for calculate, simulate, and getLogProb...

simNodesMV: Basic nimbleFunctions for using a NIMBLE model with sets of...

singleVarAccessClass-class: Class 'singleVarAccessClass'

t: The t Distribution

testBUGSmodel: Tests BUGS examples in the NIMBLE system

updateMCMCcomparisonWithHighOrderESS: Re-estimate effective sample size from results of...

valueInCompiledNimbleFunction: get or set value of member data from a compiled...

values: Access or set values for a set of nodes in a model

Wishart: The Wishart Distribution

Files in this package

nimble
nimble/inst
nimble/inst/make
nimble/inst/make/Makevars.win.in
nimble/inst/make/Makevars_lib.in
nimble/inst/make/Makevars.in
nimble/inst/CppCode
nimble/inst/CppCode/dists.cpp
nimble/inst/CppCode/Makevars
nimble/inst/CppCode/NamedObjects.cpp
nimble/inst/CppCode/ModelClassUtils.cpp
nimble/inst/CppCode/nimbleGraph.cpp
nimble/inst/CppCode/GNUmakefile
nimble/inst/CppCode/RcppNimbleUtils.cpp
nimble/inst/CppCode/accessorClasses.cpp
nimble/inst/CppCode/dllFinalizer.cpp
nimble/inst/CppCode/Utils.cpp
nimble/inst/CppCode/RcppUtils.cpp
nimble/inst/CppCode/nimDists.cpp
nimble/inst/tests
nimble/inst/tests/test-filtering.R
nimble/inst/tests/test_utils.R
nimble/inst/tests/test-Filtering2.R
nimble/inst/tests/test-Math2.R
nimble/inst/tests/test-dsl_dists.R
nimble/inst/tests/test-Mcmc2.R
nimble/inst/tests/test-getDistributionInfo.R
nimble/inst/tests/test-mcmc.R
nimble/inst/tests/test-Mcmc3.R
nimble/inst/tests/test-getParam.R
nimble/inst/tests/test-checkDSL.R
nimble/inst/tests/test-models.R
nimble/inst/tests/test-distributions.R
nimble/inst/tests/test-trunc.R
nimble/inst/tests/test-user.R
nimble/inst/tests/test-getDependencies.R
nimble/inst/tests/test-copy.R
nimble/inst/tests/test-mcem.R
nimble/inst/tests/test-getBound.R
nimble/inst/tests/test-size.R
nimble/inst/tests/test-math.R
nimble/inst/tests/test-setData.R
nimble/inst/tests/test-compareMCMCs.R
nimble/inst/tests/test-declare.R
nimble/inst/tests/test-misc.R
nimble/inst/NEWS
nimble/inst/classic-bugs
nimble/inst/classic-bugs/vol1
nimble/inst/classic-bugs/vol1/kidney
nimble/inst/classic-bugs/vol1/kidney/kidney-data.R
nimble/inst/classic-bugs/vol1/kidney/ReadMe
nimble/inst/classic-bugs/vol1/kidney/kidney.bug
nimble/inst/classic-bugs/vol1/kidney/kidney-init.R
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nimble/inst/include/Eigen/src/Core/util/Constants.h
nimble/inst/include/Eigen/src/Core/util/NonMPL2.h
nimble/inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h
nimble/inst/include/Eigen/src/Core/util/StaticAssert.h
nimble/inst/include/Eigen/src/Core/CwiseBinaryOp.h
nimble/inst/include/Eigen/src/Core/CommaInitializer.h
nimble/inst/include/Eigen/src/Core/Reverse.h
nimble/inst/include/Eigen/src/Core/Ref.h
nimble/inst/include/Eigen/src/Core/PermutationMatrix.h
nimble/inst/include/Eigen/src/Core/Block.h
nimble/inst/include/Eigen/src/Core/Stride.h
nimble/inst/include/Eigen/src/Core/ArrayBase.h
nimble/inst/include/Eigen/src/Core/Swap.h
nimble/inst/include/Eigen/src/Core/BandMatrix.h
nimble/inst/include/Eigen/src/Core/StableNorm.h
nimble/inst/include/Eigen/src/Core/SolveTriangular.h
nimble/inst/include/Eigen/src/Core/ForceAlignedAccess.h
nimble/inst/include/Eigen/src/Core/Assign.h
nimble/inst/include/Eigen/src/Core/CoreIterators.h
nimble/inst/include/Eigen/src/Core/IO.h
nimble/inst/include/Eigen/src/Eigen2Support
nimble/inst/include/Eigen/src/Eigen2Support/Cwise.h
nimble/inst/include/Eigen/src/Eigen2Support/Macros.h
nimble/inst/include/Eigen/src/Eigen2Support/Lazy.h
nimble/inst/include/Eigen/src/Eigen2Support/MathFunctions.h
nimble/inst/include/Eigen/src/Eigen2Support/CMakeLists.txt
nimble/inst/include/Eigen/src/Eigen2Support/Geometry
nimble/inst/include/Eigen/src/Eigen2Support/Geometry/Rotation2D.h
nimble/inst/include/Eigen/src/Eigen2Support/Geometry/Hyperplane.h
nimble/inst/include/Eigen/src/Eigen2Support/Geometry/Quaternion.h
nimble/inst/include/Eigen/src/Eigen2Support/Geometry/Scaling.h
nimble/inst/include/Eigen/src/Eigen2Support/Geometry/CMakeLists.txt
nimble/inst/include/Eigen/src/Eigen2Support/Geometry/ParametrizedLine.h
nimble/inst/include/Eigen/src/Eigen2Support/Geometry/All.h
nimble/inst/include/Eigen/src/Eigen2Support/Geometry/Translation.h
nimble/inst/include/Eigen/src/Eigen2Support/Geometry/RotationBase.h
nimble/inst/include/Eigen/src/Eigen2Support/Geometry/Transform.h
nimble/inst/include/Eigen/src/Eigen2Support/Geometry/AlignedBox.h
nimble/inst/include/Eigen/src/Eigen2Support/Geometry/AngleAxis.h
nimble/inst/include/Eigen/src/Eigen2Support/LeastSquares.h
nimble/inst/include/Eigen/src/Eigen2Support/VectorBlock.h
nimble/inst/include/Eigen/src/Eigen2Support/QR.h
nimble/inst/include/Eigen/src/Eigen2Support/Memory.h
nimble/inst/include/Eigen/src/Eigen2Support/CwiseOperators.h
nimble/inst/include/Eigen/src/Eigen2Support/Meta.h
nimble/inst/include/Eigen/src/Eigen2Support/Block.h
nimble/inst/include/Eigen/src/Eigen2Support/SVD.h
nimble/inst/include/Eigen/src/Eigen2Support/LU.h
nimble/inst/include/Eigen/src/Eigen2Support/Minor.h
nimble/inst/include/Eigen/src/Eigen2Support/TriangularSolver.h
nimble/inst/include/Eigen/src/SparseLU
nimble/inst/include/Eigen/src/SparseLU/SparseLU_column_bmod.h
nimble/inst/include/Eigen/src/SparseLU/SparseLU_gemm_kernel.h
nimble/inst/include/Eigen/src/SparseLU/SparseLU_panel_bmod.h
nimble/inst/include/Eigen/src/SparseLU/SparseLU_pivotL.h
nimble/inst/include/Eigen/src/SparseLU/CMakeLists.txt
nimble/inst/include/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h
nimble/inst/include/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h
nimble/inst/include/Eigen/src/SparseLU/SparseLU_pruneL.h
nimble/inst/include/Eigen/src/SparseLU/SparseLU_Utils.h
nimble/inst/include/Eigen/src/SparseLU/SparseLU_Structs.h
nimble/inst/include/Eigen/src/SparseLU/SparseLU_kernel_bmod.h
nimble/inst/include/Eigen/src/SparseLU/SparseLU_relax_snode.h
nimble/inst/include/Eigen/src/SparseLU/SparseLU_panel_dfs.h
nimble/inst/include/Eigen/src/SparseLU/SparseLU_column_dfs.h
nimble/inst/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h
nimble/inst/include/Eigen/src/SparseLU/SparseLU_Memory.h
nimble/inst/include/Eigen/src/SparseLU/SparseLU.h
nimble/inst/include/Eigen/src/SparseLU/SparseLUImpl.h
nimble/inst/include/Eigen/src/Jacobi
nimble/inst/include/Eigen/src/Jacobi/CMakeLists.txt
nimble/inst/include/Eigen/src/Jacobi/Jacobi.h
nimble/inst/include/Eigen/src/UmfPackSupport
nimble/inst/include/Eigen/src/UmfPackSupport/UmfPackSupport.h
nimble/inst/include/Eigen/src/UmfPackSupport/CMakeLists.txt
nimble/inst/include/Eigen/src/PardisoSupport
nimble/inst/include/Eigen/src/PardisoSupport/CMakeLists.txt
nimble/inst/include/Eigen/src/PardisoSupport/PardisoSupport.h
nimble/inst/include/Eigen/src/SuperLUSupport
nimble/inst/include/Eigen/src/SuperLUSupport/CMakeLists.txt
nimble/inst/include/Eigen/src/SuperLUSupport/SuperLUSupport.h
nimble/inst/include/Eigen/src/QR
nimble/inst/include/Eigen/src/QR/ColPivHouseholderQR_MKL.h
nimble/inst/include/Eigen/src/QR/CMakeLists.txt
nimble/inst/include/Eigen/src/QR/HouseholderQR.h
nimble/inst/include/Eigen/src/QR/ColPivHouseholderQR.h
nimble/inst/include/Eigen/src/QR/HouseholderQR_MKL.h
nimble/inst/include/Eigen/src/QR/FullPivHouseholderQR.h
nimble/inst/include/Eigen/src/IterativeLinearSolvers
nimble/inst/include/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h
nimble/inst/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h
nimble/inst/include/Eigen/src/IterativeLinearSolvers/CMakeLists.txt
nimble/inst/include/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h
nimble/inst/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h
nimble/inst/include/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h
nimble/inst/include/Eigen/src/SVD
nimble/inst/include/Eigen/src/SVD/JacobiSVD_MKL.h
nimble/inst/include/Eigen/src/SVD/CMakeLists.txt
nimble/inst/include/Eigen/src/SVD/JacobiSVD.h
nimble/inst/include/Eigen/src/SVD/UpperBidiagonalization.h
nimble/inst/include/Eigen/src/CholmodSupport
nimble/inst/include/Eigen/src/CholmodSupport/CholmodSupport.h
nimble/inst/include/Eigen/src/CholmodSupport/CMakeLists.txt
nimble/inst/include/Eigen/src/OrderingMethods
nimble/inst/include/Eigen/src/OrderingMethods/Amd.h
nimble/inst/include/Eigen/src/OrderingMethods/CMakeLists.txt
nimble/inst/include/Eigen/src/OrderingMethods/Ordering.h
nimble/inst/include/Eigen/src/OrderingMethods/Eigen_Colamd.h
nimble/inst/include/Eigen/src/SPQRSupport
nimble/inst/include/Eigen/src/SPQRSupport/CMakeLists.txt
nimble/inst/include/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h
nimble/inst/include/Eigen/SparseCore
nimble/inst/include/Eigen/Cholesky
nimble/inst/include/Eigen/MetisSupport
nimble/inst/include/Eigen/CMakeLists.txt
nimble/inst/include/Eigen/Dense
nimble/inst/include/Eigen/SparseCholesky
nimble/inst/include/Eigen/Geometry
nimble/inst/include/Eigen/LU
nimble/inst/include/Eigen/PaStiXSupport
nimble/inst/include/Eigen/Array
nimble/inst/include/Eigen/Householder
nimble/inst/include/Eigen/Core
nimble/inst/include/Eigen/Eigen2Support
nimble/inst/include/Eigen/QtAlignedMalloc
nimble/inst/include/Eigen/SparseLU
nimble/inst/include/Eigen/Jacobi
nimble/inst/include/Eigen/UmfPackSupport
nimble/inst/include/Eigen/PardisoSupport
nimble/inst/include/Eigen/Sparse
nimble/inst/include/Eigen/LeastSquares
nimble/inst/include/Eigen/Eigen_License.MPL2
nimble/inst/include/Eigen/SuperLUSupport
nimble/inst/include/Eigen/QR
nimble/inst/include/Eigen/IterativeLinearSolvers
nimble/inst/include/Eigen/StdList
nimble/inst/include/Eigen/SVD
nimble/inst/include/Eigen/StdDeque
nimble/inst/include/Eigen/CholmodSupport
nimble/inst/include/Eigen/OrderingMethods
nimble/inst/include/Eigen/Eigen
nimble/inst/include/Eigen/SPQRSupport
nimble/configure.ac
nimble/src
nimble/src/DO_NOT_PUT_CODE_HERE_DO_IN_INST_CPPCODE
nimble/src/Makevars.in
nimble/src/Makevars.win
nimble/src/nimble.cpp
nimble/NAMESPACE
nimble/INSTALL
nimble/NEWS
nimble/R
nimble/R/cppDefs_BUGSmodel.R nimble/R/BUGS_modelDef.R nimble/R/genCpp_eigenization.R nimble/R/genCpp_addDebugMarks.R nimble/R/all_utils.R nimble/R/RCfunction_compile.R nimble/R/types_numericLists.R nimble/R/nimbleFunction_util.R nimble/R/cppInterfaces_modelValues.R nimble/R/types_nodeFxnVector.R nimble/R/nimbleFunction_nodeFunction.R nimble/R/genCpp_initSizes.R nimble/R/BUGS_readBUGS.R nimble/R/genCpp_sizeProcessing.R nimble/R/distributions_processInputList.R nimble/R/cppDefs_RCfunction.R nimble/R/BUGS_getDependencies.R nimble/R/cppDefs_variables.R nimble/R/nimbleProject.R nimble/R/MCMC_samplers.R nimble/R/BUGS_BUGSdecl.R nimble/R/cppDefs_namedObjects.R nimble/R/NF_utils.R nimble/R/BUGS_testBUGS.R nimble/R/genCpp_liftMaps.R nimble/R/genCpp_processSpecificCalls.R nimble/R/cppDefs_modelValues.R nimble/R/MCMC_comparisons.R nimble/R/cppDefs_outputCppFromRparseTree.R nimble/R/genCpp_insertAssertions.R nimble/R/cppDefs_cppProject.R nimble/R/types_util.R nimble/R/BUGS_contexts.R nimble/R/nimbleFunction_keywordProcessing.R nimble/R/cppInterfaces_utils.R nimble/R/genCpp_operatorLists.R nimble/R/MCMC_run.R nimble/R/nimbleFunction_nodeFunctionNew.R nimble/R/MCMC_build.R nimble/R/MCMC_configuration.R nimble/R/cppInterfaces_otherTypes.R nimble/R/filtering_liuwest.R nimble/R/MCEM_build.R nimble/R/types_modelVariableAccessor.R nimble/R/setNimbleInternalFunctions.R nimble/R/cppInterfaces_models.R nimble/R/genCpp_buildIntermediates.R nimble/R/options.R nimble/R/BUGS_model.R nimble/R/MCMC_utils.R nimble/R/initializeModel.R nimble/R/filtering_enkf.R nimble/R/types_nimbleFunctionList.R nimble/R/genCpp_generateCpp.R nimble/R/cppDefs_core.R nimble/R/optimTools.R nimble/R/config.R nimble/R/BUGS_mathCompatibility.R nimble/R/MCMC_suite.R nimble/R/nimbleFunction_Rexecution.R nimble/R/registration.R nimble/R/RCfunction_core.R nimble/R/genCpp_RparseTree2exprClasses.R
nimble/R/config.R.in
nimble/R/types_symbolTable.R nimble/R/cppDefs_nimbleFunction.R nimble/R/types_modelValues.R nimble/R/filtering_bootstrap.R nimble/R/types_modelValuesAccessor.R nimble/R/cppInterfaces_nimbleFunctions.R nimble/R/distributions_implementations.R nimble/R/cppDefs_utils.R nimble/R/MCMC_conjugacy.R nimble/R/BUGS_graphNodeMaps.R nimble/R/genCpp_maps.R nimble/R/MCMC_autoBlock.R nimble/R/distributions_inputList.R nimble/R/genCpp_exprClass.R nimble/R/nimbleFunction_core.R
nimble/R/nimble-package.r
nimble/R/miscFunctions.R nimble/R/zzz.R nimble/R/makevars.R nimble/R/BUGS_utils.R nimble/R/nimbleFunction_compile.R nimble/R/BUGS_nimbleGraph.R nimble/R/filtering_auxiliary.R
nimble/README.md
nimble/MD5
nimble/DESCRIPTION
nimble/configure
nimble/man
nimble/man/nimbleCode.Rd nimble/man/MCMCconf-class.Rd nimble/man/buildAuxiliaryFilter.Rd nimble/man/getBUGSexampleDir.Rd nimble/man/nimbleFunction.Rd nimble/man/decideAndJump.Rd nimble/man/setupOutputs.Rd nimble/man/nimPrint.Rd nimble/man/codeBlockClass-class.Rd nimble/man/nimbleFunctionVirtual.Rd nimble/man/autoBlock.Rd nimble/man/initializeModel.Rd nimble/man/getLoadingNamespace.Rd nimble/man/MultivariateNormal.Rd nimble/man/reshape_comparison_results.Rd nimble/man/Interval.Rd nimble/man/registerDistributions.Rd nimble/man/nodeFunctions.Rd nimble/man/checkInterrupt.Rd nimble/man/nimbleOptions.Rd nimble/man/configureMCMC.Rd nimble/man/buildEnsembleKF.Rd nimble/man/values.Rd nimble/man/identityMatrix.Rd nimble/man/getDefinition.Rd nimble/man/Categorical.Rd nimble/man/setAndCalculate.Rd nimble/man/simNodes.Rd nimble/man/buildMCEM.Rd nimble/man/nimMatrix.Rd nimble/man/Multivariate-t.Rd nimble/man/nimNumeric.Rd nimble/man/nimInteger.Rd nimble/man/rename_MCMC_comparison_method.Rd nimble/man/modelValuesConf.Rd nimble/man/runMCMC.Rd nimble/man/Wishart.Rd nimble/man/nimble-internal.Rd nimble/man/Exponential.Rd nimble/man/buildBootstrapFilter.Rd nimble/man/makeParamInfo.Rd nimble/man/getBound.Rd nimble/man/setAndCalculateOne.Rd nimble/man/buildMCMC.Rd nimble/man/compileNimble.Rd nimble/man/modelValues.Rd nimble/man/getParam.Rd nimble/man/RmodelBaseClass-class.Rd nimble/man/getsize.Rd nimble/man/CmodelBaseClass-class.Rd nimble/man/nimbleFunctionBase-class.Rd nimble/man/setSize.Rd nimble/man/is.nf.Rd nimble/man/nfVar.Rd nimble/man/nimStop.Rd nimble/man/declare.Rd nimble/man/t.Rd nimble/man/Rmatrix2mvOneVar.Rd nimble/man/rankSample.Rd nimble/man/nfMethod.Rd nimble/man/nimble-math.Rd nimble/man/asRow.Rd nimble/man/makeBoundInfo.Rd nimble/man/getNimbleOption.Rd nimble/man/modelDefClass-class.Rd nimble/man/readBUGSmodel.Rd nimble/man/simNodesMV.Rd nimble/man/BUGSdeclClass-class.Rd nimble/man/Dirichlet.Rd nimble/man/valueInCompiledNimbleFunction.Rd nimble/man/modelBaseClass-class.Rd nimble/man/buildLiuWestFilter.Rd nimble/man/deregisterDistributions.Rd nimble/man/CnimbleFunctionBase-class.Rd nimble/man/singleVarAccessClass-class.Rd nimble/man/resize.Rd nimble/man/modelValuesBaseClass-class.Rd nimble/man/nimArray.Rd nimble/man/run.time.Rd nimble/man/Multinomial.Rd nimble/man/MCMCsuite.Rd nimble/man/testBUGSmodel.Rd nimble/man/nimbleFunctionList-class.Rd nimble/man/nimbleModel.Rd nimble/man/nimDim.Rd nimble/man/updateMCMCcomparisonWithHighOrderESS.Rd nimble/man/compareMCMCs.Rd nimble/man/combine_MCMC_comparison_results.Rd nimble/man/distributionInfo.Rd nimble/man/MCMCsuiteClass-class.Rd nimble/man/nimCopy.Rd nimble/man/make_MCMC_comparison_pages.Rd nimble/man/decide.Rd nimble/man/Constraint.Rd nimble/man/nimCat.Rd nimble/man/samplers.Rd
nimble/configure.win
nimble/cleanup
nimble/LICENSE
nimble/cleanup.win

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