nlme: Linear and Nonlinear Mixed Effects Models

Fit and compare Gaussian linear and nonlinear mixed-effects models.

AuthorJosé Pinheiro [aut] (S version), Douglas Bates [aut] (up to 2007), Saikat DebRoy [ctb] (up to 2002), Deepayan Sarkar [ctb] (up to 2005), EISPACK authors [ctb] (src/rs.f), Siem Heisterkamp [ctb] (Author fixed sigma), Bert Van Willigen [ctb] (Programmer fixed sigma), R-core [aut, cre]
Date of publication2017-01-19 18:10:22
MaintainerR-core <R-core@R-project.org>
LicenseGPL (>= 2) | file LICENCE
Version3.1-129

View on CRAN

Man pages

ACF: Autocorrelation Function

ACF.gls: Autocorrelation Function for gls Residuals

ACF.lme: Autocorrelation Function for lme Residuals

Alfalfa: Split-Plot Experiment on Varieties of Alfalfa

allCoef: Extract Coefficients from a Set of Objects

anova.gls: Compare Likelihoods of Fitted Objects

anova.lme: Compare Likelihoods of Fitted Objects

as.matrix.corStruct: Matrix of a corStruct Object

as.matrix.pdMat: Matrix of a pdMat Object

as.matrix.reStruct: Matrices of an reStruct Object

asOneFormula: Combine Formulas of a Set of Objects

Assay: Bioassay on Cell Culture Plate

asTable: Convert groupedData to a matrix

augPred: Augmented Predictions

balancedGrouped: Create a groupedData object from a matrix

bdf: Language scores

BodyWeight: Rat weight over time for different diets

Cefamandole: Pharmacokinetics of Cefamandole

Coef: Assign Values to Coefficients

coef.corStruct: Coefficients of a corStruct Object

coef.gnls: Extract gnls Coefficients

coef.lme: Extract lme Coefficients

coef.lmList: Extract lmList Coefficients

coef.modelStruct: Extract modelStruct Object Coefficients

coef.pdMat: pdMat Object Coefficients

coef.reStruct: reStruct Object Coefficients

coef.varFunc: varFunc Object Coefficients

collapse: Collapse According to Groups

collapse.groupedData: Collapse a groupedData Object

compareFits: Compare Fitted Objects

comparePred: Compare Predictions

corAR1: AR(1) Correlation Structure

corARMA: ARMA(p,q) Correlation Structure

corCAR1: Continuous AR(1) Correlation Structure

corClasses: Correlation Structure Classes

corCompSymm: Compound Symmetry Correlation Structure

corExp: Exponential Correlation Structure

corFactor: Factor of a Correlation Matrix

corFactor.corStruct: Factor of a corStruct Object Matrix

corGaus: Gaussian Correlation Structure

corLin: Linear Correlation Structure

corMatrix: Extract Correlation Matrix

corMatrix.corStruct: Matrix of a corStruct Object

corMatrix.pdMat: Extract Correlation Matrix from a pdMat Object

corMatrix.reStruct: Extract Correlation Matrix from Components of an reStruct...

corNatural: General correlation in natural parameterization

corRatio: Rational Quadratic Correlation Structure

corSpatial: Spatial Correlation Structure

corSpher: Spherical Correlation Structure

corSymm: General Correlation Structure

Covariate: Assign Covariate Values

Covariate.varFunc: Assign varFunc Covariate

Dialyzer: High-Flux Hemodialyzer

Dim: Extract Dimensions from an Object

Dim.corSpatial: Dimensions of a corSpatial Object

Dim.corStruct: Dimensions of a corStruct Object

Dim.pdMat: Dimensions of a pdMat Object

Earthquake: Earthquake Intensity

ergoStool: Ergometrics experiment with stool types

Extract.pdMat: Subscript a pdMat Object

Fatigue: Cracks caused by metal fatigue

fdHess: Finite difference Hessian

fitted.glsStruct: Calculate glsStruct Fitted Values

fitted.gnlsStruct: Calculate gnlsStruct Fitted Values

fitted.lme: Extract lme Fitted Values

fitted.lmeStruct: Calculate lmeStruct Fitted Values

fitted.lmList: Extract lmList Fitted Values

fitted.nlmeStruct: Calculate nlmeStruct Fitted Values

fixed.effects: Extract Fixed Effects

fixef.lmList: Extract lmList Fixed Effects

formula.pdBlocked: Extract pdBlocked Formula

formula.pdMat: Extract pdMat Formula

formula.reStruct: Extract reStruct Object Formula

gapply: Apply a Function by Groups

Gasoline: Refinery yield of gasoline

getCovariate: Extract Covariate from an Object

getCovariate.corStruct: Extract corStruct Object Covariate

getCovariate.data.frame: Extract Data Frame Covariate

getCovariateFormula: Extract Covariates Formula

getCovariate.varFunc: Extract varFunc Covariate

getData: Extract Data from an Object

getData.gls: Extract gls Object Data

getData.lme: Extract lme Object Data

getData.lmList: Extract lmList Object Data

getGroups: Extract Grouping Factors from an Object

getGroups.corStruct: Extract corStruct Groups

getGroups.data.frame: Extract Groups from a Data Frame

getGroupsFormula: Extract Grouping Formula

getGroups.gls: Extract gls Object Groups

getGroups.lme: Extract lme Object Groups

getGroups.lmList: Extract lmList Object Groups

getGroups.varFunc: Extract varFunc Groups

getResponse: Extract Response Variable from an Object

getResponseFormula: Extract Formula Specifying Response Variable

getVarCov: Extract variance-covariance matrix

gls: Fit Linear Model Using Generalized Least Squares

glsControl: Control Values for gls Fit

gls-internal: Auxiliary functions used by gls

glsObject: Fitted gls Object

glsStruct: Generalized Least Squares Structure

Glucose: Glucose levels over time

Glucose2: Glucose Levels Following Alcohol Ingestion

gnls: Fit Nonlinear Model Using Generalized Least Squares

gnlsControl: Control Values for gnls Fit

gnlsObject: Fitted gnls Object

gnlsStruct: Generalized Nonlinear Least Squares Structure

groupedData: Construct a groupedData Object

gsummary: Summarize by Groups

Gun: Methods for firing naval guns

IGF: Radioimmunoassay of IGF-I Protein

Initialize: Initialize Object

Initialize.corStruct: Initialize corStruct Object

Initialize.glsStruct: Initialize a glsStruct Object

Initialize.lmeStruct: Initialize an lmeStruct Object

Initialize.reStruct: Initialize reStruct Object

Initialize.varFunc: Initialize varFunc Object

intervals: Confidence Intervals on Coefficients

intervals.gls: Confidence Intervals on gls Parameters

intervals.lme: Confidence Intervals on lme Parameters

intervals.lmList: Confidence Intervals on lmList Coefficients

isBalanced: Check a Design for Balance

isInitialized: Check if Object is Initialized

LDEsysMat: Generate system matrix for LDEs

lme: Linear Mixed-Effects Models

lmeControl: Specifying Control Values for lme Fit

lme.groupedData: LME fit from groupedData Object

lme.lmList: LME fit from lmList Object

lmeObject: Fitted lme Object

lmeStruct: Linear Mixed-Effects Structure

lmList: List of lm Objects with a Common Model

lmList.groupedData: lmList Fit from a groupedData Object

logDet: Extract the Logarithm of the Determinant

logDet.corStruct: Extract corStruct Log-Determinant

logDet.pdMat: Extract Log-Determinant from a pdMat Object

logDet.reStruct: Extract reStruct Log-Determinants

logLik.corStruct: Extract corStruct Log-Likelihood

logLik.glsStruct: Log-Likelihood of a glsStruct Object

logLik.gnls: Log-Likelihood of a gnls Object

logLik.gnlsStruct: Log-Likelihood of a gnlsStruct Object

logLik.lme: Log-Likelihood of an lme Object

logLik.lmeStruct: Log-Likelihood of an lmeStruct Object

logLik.lmList: Log-Likelihood of an lmList Object

logLik.reStruct: Calculate reStruct Log-Likelihood

logLik.varFunc: Extract varFunc logLik

Machines: Productivity Scores for Machines and Workers

MathAchieve: Mathematics achievement scores

MathAchSchool: School demographic data for MathAchieve

Matrix: Assign Matrix Values

Matrix.pdMat: Assign Matrix to a pdMat or pdBlocked Object

Matrix.reStruct: Assign reStruct Matrices

Meat: Tenderness of meat

Milk: Protein content of cows' milk

model.matrix.reStruct: reStruct Model Matrix

Muscle: Contraction of heart muscle sections

Names: Names Associated with an Object

Names.formula: Extract Names from a formula

Names.pdBlocked: Names of a pdBlocked Object

Names.pdMat: Names of a pdMat Object

Names.reStruct: Names of an reStruct Object

needUpdate: Check if Update is Needed

needUpdate.modelStruct: Check if a modelStruct Object Needs Updating

Nitrendipene: Assay of nitrendipene

nlme: Nonlinear Mixed-Effects Models

nlmeControl: Control Values for nlme Fit

nlme.nlsList: NLME fit from nlsList Object

nlmeObject: Fitted nlme Object

nlmeStruct: Nonlinear Mixed-Effects Structure

nlsList: List of nls Objects with a Common Model

nlsList.selfStart: nlsList Fit from a selfStart Function

Oats: Split-plot Experiment on Varieties of Oats

Orthodont: Growth curve data on an orthdontic measurement

Ovary: Counts of Ovarian Follicles

Oxboys: Heights of Boys in Oxford

Oxide: Variability in Semiconductor Manufacturing

pairs.compareFits: Pairs Plot of compareFits Object

pairs.lme: Pairs Plot of an lme Object

pairs.lmList: Pairs Plot of an lmList Object

PBG: Effect of Phenylbiguanide on Blood Pressure

pdBlocked: Positive-Definite Block Diagonal Matrix

pdClasses: Positive-Definite Matrix Classes

pdCompSymm: Positive-Definite Matrix with Compound Symmetry Structure

pdConstruct: Construct pdMat Objects

pdConstruct.pdBlocked: Construct pdBlocked Objects

pdDiag: Diagonal Positive-Definite Matrix

pdFactor: Square-Root Factor of a Positive-Definite Matrix

pdFactor.reStruct: Extract Square-Root Factor from Components of an reStruct...

pdIdent: Multiple of the Identity Positive-Definite Matrix

pdLogChol: General Positive-Definite Matrix

pdMat: Positive-Definite Matrix

pdMatrix: Extract Matrix or Square-Root Factor from a pdMat Object

pdMatrix.reStruct: Extract Matrix or Square-Root Factor from Components of an...

pdNatural: General Positive-Definite Matrix in Natural Parametrization

pdSymm: General Positive-Definite Matrix

Phenobarb: Phenobarbitol Kinetics

phenoModel: Model function for the Phenobarb data

Pixel: X-ray pixel intensities over time

plot.ACF: Plot an ACF Object

plot.augPred: Plot an augPred Object

plot.compareFits: Plot a compareFits Object

plot.gls: Plot a gls Object

plot.intervals.lmList: Plot lmList Confidence Intervals

plot.lme: Plot an lme or nls object

plot.lmList: Plot an lmList Object

plot.nffGroupedData: Plot an nffGroupedData Object

plot.nfnGroupedData: Plot an nfnGroupedData Object

plot.nmGroupedData: Plot an nmGroupedData Object

plot.ranef.lme: Plot a ranef.lme Object

plot.ranef.lmList: Plot a ranef.lmList Object

plot.Variogram: Plot a Variogram Object

pooledSD: Extract Pooled Standard Deviation

predict.gls: Predictions from a gls Object

predict.gnls: Predictions from a gnls Object

predict.lme: Predictions from an lme Object

predict.lmList: Predictions from an lmList Object

predict.nlme: Predictions from an nlme Object

print.summary.pdMat: Print a summary.pdMat Object

print.varFunc: Print a varFunc Object

qqnorm.gls: Normal Plot of Residuals from a gls Object

qqnorm.lme: Normal Plot of Residuals or Random Effects from an lme Object

Quinidine: Quinidine Kinetics

quinModel: Model function for the Quinidine data

Rail: Evaluation of Stress in Railway Rails

random.effects: Extract Random Effects

ranef.lme: Extract lme Random Effects

ranef.lmList: Extract lmList Random Effects

RatPupWeight: The weight of rat pups

recalc: Recalculate Condensed Linear Model Object

recalc.corStruct: Recalculate for corStruct Object

recalc.modelStruct: Recalculate for a modelStruct Object

recalc.reStruct: Recalculate for an reStruct Object

recalc.varFunc: Recalculate for varFunc Object

Relaxin: Assay for Relaxin

Remifentanil: Pharmacokinetics of remifentanil

residuals.gls: Extract gls Residuals

residuals.glsStruct: Calculate glsStruct Residuals

residuals.gnlsStruct: Calculate gnlsStruct Residuals

residuals.lme: Extract lme Residuals

residuals.lmeStruct: Calculate lmeStruct Residuals

residuals.lmList: Extract lmList Residuals

residuals.nlmeStruct: Calculate nlmeStruct Residuals

reStruct: Random Effects Structure

simulate.lme: Simulate Results from 'lme' Models

solve.pdMat: Calculate Inverse of a Positive-Definite Matrix

solve.reStruct: Apply Solve to an reStruct Object

Soybean: Growth of soybean plants

splitFormula: Split a Formula

Spruce: Growth of Spruce Trees

summary.corStruct: Summarize a corStruct Object

summary.gls: Summarize a Generalized Least Squares 'gls' Object

summary.lme: Summarize an lme Object

summary.lmList: Summarize an lmList Object

summary.modelStruct: Summarize a modelStruct Object

summary.nlsList: Summarize an nlsList Object

summary.pdMat: Summarize a pdMat Object

summary.varFunc: Summarize varFunc Object

Tetracycline1: Pharmacokinetics of tetracycline

Tetracycline2: Pharmacokinetics of tetracycline

update.modelStruct: Update a modelStruct Object

update.varFunc: Update varFunc Object

varClasses: Variance Function Classes

varComb: Combination of Variance Functions

varConstPower: Constant Plus Power Variance Function

VarCorr: Extract variance and correlation components

varExp: Exponential Variance Function

varFixed: Fixed Variance Function

varFunc: Variance Function Structure

varIdent: Constant Variance Function

Variogram: Calculate Semi-variogram

Variogram.corExp: Calculate Semi-variogram for a corExp Object

Variogram.corGaus: Calculate Semi-variogram for a corGaus Object

Variogram.corLin: Calculate Semi-variogram for a corLin Object

Variogram.corRatio: Calculate Semi-variogram for a corRatio Object

Variogram.corSpatial: Calculate Semi-variogram for a corSpatial Object

Variogram.corSpher: Calculate Semi-variogram for a corSpher Object

Variogram.default: Calculate Semi-variogram

Variogram.gls: Calculate Semi-variogram for Residuals from a gls Object

Variogram.lme: Calculate Semi-variogram for Residuals from an lme Object

varPower: Power Variance Function

varWeights: Extract Variance Function Weights

varWeights.glsStruct: Variance Weights for glsStruct Object

varWeights.lmeStruct: Variance Weights for lmeStruct Object

Wafer: Modeling of Analog MOS Circuits

Wheat: Yields by growing conditions

Wheat2: Wheat Yield Trials

Files in this package

nlme
nlme/TODO
nlme/po
nlme/po/R-fr.po
nlme/po/de.po
nlme/po/R-nlme.pot
nlme/po/pl.po
nlme/po/R-de.po
nlme/po/fr.po
nlme/po/ko.po
nlme/po/nlme.pot
nlme/po/R-pl.po
nlme/po/R-ko.po
nlme/inst
nlme/inst/po
nlme/inst/po/pl
nlme/inst/po/pl/LC_MESSAGES
nlme/inst/po/pl/LC_MESSAGES/R-nlme.mo
nlme/inst/po/pl/LC_MESSAGES/nlme.mo
nlme/inst/po/en@quot
nlme/inst/po/en@quot/LC_MESSAGES
nlme/inst/po/en@quot/LC_MESSAGES/R-nlme.mo
nlme/inst/po/en@quot/LC_MESSAGES/nlme.mo
nlme/inst/po/ko
nlme/inst/po/ko/LC_MESSAGES
nlme/inst/po/ko/LC_MESSAGES/R-nlme.mo
nlme/inst/po/ko/LC_MESSAGES/nlme.mo
nlme/inst/po/fr
nlme/inst/po/fr/LC_MESSAGES
nlme/inst/po/fr/LC_MESSAGES/R-nlme.mo
nlme/inst/po/fr/LC_MESSAGES/nlme.mo
nlme/inst/po/de
nlme/inst/po/de/LC_MESSAGES
nlme/inst/po/de/LC_MESSAGES/R-nlme.mo
nlme/inst/po/de/LC_MESSAGES/nlme.mo
nlme/inst/CITATION
nlme/inst/scripts
nlme/inst/scripts/sims.rda
nlme/inst/scripts/ch01.R
nlme/inst/scripts/ch02.R
nlme/inst/scripts/ch06.R
nlme/inst/scripts/runme.R
nlme/inst/scripts/ch05.R
nlme/inst/scripts/ch08.R
nlme/inst/scripts/ch04.R
nlme/inst/scripts/ch03.R
nlme/inst/mlbook
nlme/inst/mlbook/README
nlme/inst/mlbook/ch05.R
nlme/inst/mlbook/ch04.R
nlme/tests
nlme/tests/anova.gls.R
nlme/tests/nlme.R
nlme/tests/nlme2.R
nlme/tests/lme.Rout.save
nlme/tests/ss2.rds
nlme/tests/data.frame.R
nlme/tests/missing.R
nlme/tests/contrMat.R
nlme/tests/fitted.R
nlme/tests/predict.lme.R
nlme/tests/augPredmissing.R
nlme/tests/coef.R
nlme/tests/deparse.R
nlme/tests/augPred_lab.R
nlme/tests/varIdent.R
nlme/tests/coef.Rout.save
nlme/tests/updateLme.R
nlme/tests/missing.Rout.save
nlme/tests/sigma-fixed-etc.R
nlme/tests/getData.R
nlme/tests/lmList.R
nlme/tests/gls.R
nlme/tests/lme.R
nlme/src
nlme/src/rs.f
nlme/src/matrix.c
nlme/src/Makevars
nlme/src/pdMat.h
nlme/src/nlOptimizer.h
nlme/src/base.h
nlme/src/nlmefit.h
nlme/src/nlme.c
nlme/src/chol.f
nlme/src/nlmefit.c
nlme/src/pdMat.c
nlme/src/nlOptimizer.c
nlme/src/gnls.c
nlme/src/init.c
nlme/src/corStruct.c
nlme/src/matrix.h
nlme/NAMESPACE
nlme/data
nlme/data/Cefamandole.rda
nlme/data/Quinidine.rda
nlme/data/Gun.rda
nlme/data/Relaxin.rda
nlme/data/Orthodont.rda
nlme/data/Ovary.rda
nlme/data/Tetracycline1.rda
nlme/data/Remifentanil.rda
nlme/data/PBG.rda
nlme/data/Phenobarb.rda
nlme/data/Assay.rda
nlme/data/BodyWeight.rda
nlme/data/Machines.rda
nlme/data/Glucose2.rda
nlme/data/Earthquake.rda
nlme/data/Milk.rda
nlme/data/Wheat.rda
nlme/data/bdf.rda
nlme/data/Oxboys.rda
nlme/data/Muscle.rda
nlme/data/Alfalfa.rda
nlme/data/Wheat2.rda
nlme/data/IGF.rda
nlme/data/MathAchieve.rda
nlme/data/Fatigue.rda
nlme/data/Pixel.rda
nlme/data/Nitrendipene.rda
nlme/data/Gasoline.rda
nlme/data/ergoStool.rda
nlme/data/Rail.rda
nlme/data/Tetracycline2.rda
nlme/data/Soybean.rda
nlme/data/MathAchSchool.rda
nlme/data/Wafer.rda
nlme/data/Dialyzer.rda
nlme/data/Oats.rda
nlme/data/Spruce.rda
nlme/data/Glucose.rda
nlme/data/Oxide.rda
nlme/data/RatPupWeight.rda
nlme/data/Meat.rda
nlme/R
nlme/R/groupedData.R nlme/R/gnls.R nlme/R/zzMethods.R nlme/R/nlme.R nlme/R/newMethods.R nlme/R/corStruct.R nlme/R/newGenerics.R nlme/R/nlsList.R nlme/R/reStruct.R nlme/R/modelStruct.R nlme/R/VarCov.R nlme/R/varFunc.R nlme/R/pdMat.R nlme/R/simulate.R nlme/R/newFunc.R nlme/R/VarCorr.R nlme/R/lmList.R nlme/R/gls.R nlme/R/lme.R
nlme/MD5
nlme/README
nlme/DESCRIPTION
nlme/LICENCE
nlme/ChangeLog
nlme/man
nlme/man/getGroups.gls.Rd nlme/man/plot.gls.Rd nlme/man/summary.pdMat.Rd nlme/man/getGroupsFormula.Rd nlme/man/pdIdent.Rd nlme/man/summary.gls.Rd nlme/man/corMatrix.reStruct.Rd nlme/man/Coef.Rd nlme/man/Tetracycline1.Rd nlme/man/getData.lmList.Rd nlme/man/Dim.corStruct.Rd nlme/man/varExp.Rd nlme/man/gnls.Rd nlme/man/VarCorr.Rd nlme/man/pdMat.Rd nlme/man/getData.lme.Rd nlme/man/pdConstruct.Rd nlme/man/as.matrix.pdMat.Rd nlme/man/Names.Rd nlme/man/ACF.gls.Rd nlme/man/coef.reStruct.Rd nlme/man/coef.pdMat.Rd nlme/man/collapse.groupedData.Rd nlme/man/residuals.lmList.Rd nlme/man/recalc.varFunc.Rd nlme/man/Initialize.Rd nlme/man/pdMatrix.Rd nlme/man/corSpher.Rd nlme/man/Glucose2.Rd nlme/man/Dim.corSpatial.Rd nlme/man/Variogram.corRatio.Rd nlme/man/plot.ranef.lmList.Rd nlme/man/getCovariate.corStruct.Rd nlme/man/LDEsysMat.Rd nlme/man/update.modelStruct.Rd nlme/man/coef.varFunc.Rd nlme/man/pdDiag.Rd nlme/man/corCAR1.Rd nlme/man/logDet.corStruct.Rd nlme/man/summary.lme.Rd nlme/man/logLik.reStruct.Rd nlme/man/plot.nffGroupedData.Rd nlme/man/lmList.Rd nlme/man/Meat.Rd nlme/man/pdCompSymm.Rd nlme/man/Variogram.corSpatial.Rd nlme/man/ergoStool.Rd nlme/man/Relaxin.Rd nlme/man/recalc.modelStruct.Rd nlme/man/summary.modelStruct.Rd nlme/man/asOneFormula.Rd nlme/man/coef.lmList.Rd nlme/man/compareFits.Rd nlme/man/Matrix.reStruct.Rd nlme/man/plot.compareFits.Rd nlme/man/Variogram.corExp.Rd nlme/man/varComb.Rd nlme/man/lmList.groupedData.Rd nlme/man/corMatrix.pdMat.Rd nlme/man/pdSymm.Rd nlme/man/lme.lmList.Rd nlme/man/predict.lme.Rd nlme/man/gls-internal.Rd nlme/man/varConstPower.Rd nlme/man/residuals.glsStruct.Rd nlme/man/qqnorm.lme.Rd nlme/man/formula.reStruct.Rd nlme/man/residuals.gls.Rd nlme/man/lmeControl.Rd nlme/man/BodyWeight.Rd nlme/man/coef.gnls.Rd nlme/man/Machines.Rd nlme/man/Names.reStruct.Rd nlme/man/plot.Variogram.Rd nlme/man/Dialyzer.Rd nlme/man/fitted.lmeStruct.Rd nlme/man/gnlsStruct.Rd nlme/man/getGroups.Rd nlme/man/Initialize.glsStruct.Rd nlme/man/Matrix.pdMat.Rd nlme/man/varWeights.glsStruct.Rd nlme/man/nlmeStruct.Rd nlme/man/plot.lme.Rd nlme/man/Glucose.Rd nlme/man/Names.pdBlocked.Rd nlme/man/logLik.lmeStruct.Rd nlme/man/summary.corStruct.Rd nlme/man/corRatio.Rd nlme/man/predict.gnls.Rd nlme/man/glsStruct.Rd nlme/man/varIdent.Rd nlme/man/qqnorm.gls.Rd nlme/man/Wheat2.Rd nlme/man/fdHess.Rd nlme/man/recalc.reStruct.Rd nlme/man/glsControl.Rd nlme/man/Tetracycline2.Rd nlme/man/Names.formula.Rd nlme/man/phenoModel.Rd nlme/man/corCompSymm.Rd nlme/man/Nitrendipene.Rd nlme/man/logLik.varFunc.Rd nlme/man/MathAchieve.Rd nlme/man/asTable.Rd nlme/man/nlsList.selfStart.Rd nlme/man/Variogram.corGaus.Rd nlme/man/summary.nlsList.Rd nlme/man/Variogram.corSpher.Rd nlme/man/formula.pdBlocked.Rd nlme/man/lme.groupedData.Rd nlme/man/Fatigue.Rd nlme/man/Spruce.Rd nlme/man/coef.lme.Rd nlme/man/varWeights.Rd nlme/man/pdNatural.Rd nlme/man/lmeStruct.Rd nlme/man/nlmeObject.Rd nlme/man/as.matrix.corStruct.Rd nlme/man/predict.nlme.Rd nlme/man/Alfalfa.Rd nlme/man/pdConstruct.pdBlocked.Rd nlme/man/Phenobarb.Rd nlme/man/groupedData.Rd nlme/man/print.varFunc.Rd nlme/man/corMatrix.corStruct.Rd nlme/man/corExp.Rd nlme/man/predict.gls.Rd nlme/man/pooledSD.Rd nlme/man/residuals.nlmeStruct.Rd nlme/man/Oats.Rd nlme/man/corClasses.Rd nlme/man/Wheat.Rd nlme/man/Covariate.varFunc.Rd nlme/man/getCovariate.data.frame.Rd nlme/man/getCovariate.Rd nlme/man/pdBlocked.Rd nlme/man/coef.modelStruct.Rd nlme/man/varClasses.Rd nlme/man/corAR1.Rd nlme/man/Pixel.Rd nlme/man/anova.gls.Rd nlme/man/augPred.Rd nlme/man/residuals.lme.Rd nlme/man/Muscle.Rd nlme/man/pairs.lme.Rd nlme/man/nlsList.Rd nlme/man/PBG.Rd nlme/man/nlme.nlsList.Rd nlme/man/varFunc.Rd nlme/man/Variogram.corLin.Rd nlme/man/corARMA.Rd nlme/man/simulate.lme.Rd nlme/man/getCovariate.varFunc.Rd nlme/man/MathAchSchool.Rd nlme/man/Variogram.default.Rd nlme/man/plot.ranef.lme.Rd nlme/man/plot.lmList.Rd nlme/man/intervals.gls.Rd nlme/man/getData.gls.Rd nlme/man/Variogram.gls.Rd nlme/man/Matrix.Rd nlme/man/getVarCov.Rd nlme/man/print.summary.pdMat.Rd nlme/man/corSpatial.Rd nlme/man/corNatural.Rd nlme/man/quinModel.Rd nlme/man/logLik.gnlsStruct.Rd nlme/man/intervals.lmList.Rd nlme/man/logLik.glsStruct.Rd nlme/man/corFactor.Rd nlme/man/Covariate.Rd nlme/man/gapply.Rd nlme/man/ACF.lme.Rd nlme/man/gnlsObject.Rd nlme/man/fitted.lme.Rd nlme/man/logLik.gnls.Rd nlme/man/IGF.Rd nlme/man/lmeObject.Rd nlme/man/fitted.glsStruct.Rd nlme/man/lme.Rd nlme/man/logDet.reStruct.Rd nlme/man/plot.nmGroupedData.Rd nlme/man/Milk.Rd nlme/man/Initialize.corStruct.Rd nlme/man/Cefamandole.Rd nlme/man/getResponse.Rd nlme/man/getGroups.lme.Rd nlme/man/getGroups.varFunc.Rd nlme/man/logLik.corStruct.Rd nlme/man/solve.reStruct.Rd nlme/man/needUpdate.Rd nlme/man/Initialize.reStruct.Rd nlme/man/fitted.lmList.Rd nlme/man/Remifentanil.Rd nlme/man/summary.varFunc.Rd nlme/man/corLin.Rd nlme/man/fixed.effects.Rd nlme/man/Dim.Rd nlme/man/formula.pdMat.Rd nlme/man/pairs.compareFits.Rd nlme/man/Oxboys.Rd nlme/man/recalc.Rd nlme/man/logDet.Rd nlme/man/isInitialized.Rd nlme/man/solve.pdMat.Rd nlme/man/getResponseFormula.Rd nlme/man/Oxide.Rd nlme/man/pdClasses.Rd nlme/man/gsummary.Rd nlme/man/pairs.lmList.Rd nlme/man/Extract.pdMat.Rd nlme/man/intervals.Rd nlme/man/corGaus.Rd nlme/man/Rail.Rd nlme/man/Initialize.varFunc.Rd nlme/man/corFactor.corStruct.Rd nlme/man/Initialize.lmeStruct.Rd nlme/man/Soybean.Rd nlme/man/pdLogChol.Rd nlme/man/isBalanced.Rd nlme/man/update.varFunc.Rd nlme/man/reStruct.Rd nlme/man/logLik.lme.Rd nlme/man/gls.Rd nlme/man/comparePred.Rd nlme/man/allCoef.Rd nlme/man/RatPupWeight.Rd nlme/man/residuals.lmeStruct.Rd nlme/man/collapse.Rd nlme/man/logLik.lmList.Rd nlme/man/Gun.Rd nlme/man/recalc.corStruct.Rd nlme/man/logDet.pdMat.Rd nlme/man/pdMatrix.reStruct.Rd nlme/man/Ovary.Rd nlme/man/pdFactor.Rd nlme/man/ACF.Rd nlme/man/predict.lmList.Rd nlme/man/coef.corStruct.Rd nlme/man/varPower.Rd nlme/man/ranef.lme.Rd nlme/man/Gasoline.Rd nlme/man/plot.nfnGroupedData.Rd nlme/man/Variogram.lme.Rd nlme/man/Variogram.Rd nlme/man/summary.lmList.Rd nlme/man/anova.lme.Rd nlme/man/residuals.gnlsStruct.Rd nlme/man/fitted.gnlsStruct.Rd nlme/man/plot.augPred.Rd nlme/man/getCovariateFormula.Rd nlme/man/Earthquake.Rd nlme/man/pdFactor.reStruct.Rd nlme/man/plot.intervals.lmList.Rd nlme/man/bdf.Rd nlme/man/fixef.lmList.Rd nlme/man/corMatrix.Rd nlme/man/model.matrix.reStruct.Rd nlme/man/corSymm.Rd nlme/man/glsObject.Rd nlme/man/getData.Rd nlme/man/Dim.pdMat.Rd nlme/man/plot.ACF.Rd nlme/man/ranef.lmList.Rd nlme/man/nlme.Rd nlme/man/varFixed.Rd nlme/man/Quinidine.Rd nlme/man/fitted.nlmeStruct.Rd nlme/man/getGroups.data.frame.Rd nlme/man/getGroups.corStruct.Rd nlme/man/Wafer.Rd nlme/man/getGroups.lmList.Rd nlme/man/splitFormula.Rd nlme/man/Names.pdMat.Rd nlme/man/gnlsControl.Rd nlme/man/varWeights.lmeStruct.Rd nlme/man/intervals.lme.Rd nlme/man/random.effects.Rd nlme/man/Assay.Rd nlme/man/as.matrix.reStruct.Rd nlme/man/Orthodont.Rd nlme/man/balancedGrouped.Rd nlme/man/needUpdate.modelStruct.Rd nlme/man/nlmeControl.Rd
nlme/INDEX

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