nlme: Linear and Nonlinear Mixed Effects Models

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Fit and compare Gaussian linear and nonlinear mixed-effects models.

Author
José Pinheiro [aut] (S version), Douglas Bates [aut] (up to 2007), Saikat DebRoy [ctb] (up to 2002), Deepayan Sarkar [ctb] (up to 2005), EISPACK authors [ctb] (src/rs.f), Siem Heisterkamp [ctb] (Author fixed sigma), Bert Van Willigen [ctb] (Programmer fixed sigma), R-core [aut, cre]
Date of publication
2016-05-10 11:40:55
Maintainer
R-core <R-core@R-project.org>
License
GPL (>= 2) | file LICENCE
Version
3.1-128

View on CRAN

Man pages

ACF
Autocorrelation Function
ACF.gls
Autocorrelation Function for gls Residuals
ACF.lme
Autocorrelation Function for lme Residuals
Alfalfa
Split-Plot Experiment on Varieties of Alfalfa
allCoef
Extract Coefficients from a Set of Objects
anova.gls
Compare Likelihoods of Fitted Objects
anova.lme
Compare Likelihoods of Fitted Objects
as.matrix.corStruct
Matrix of a corStruct Object
as.matrix.pdMat
Matrix of a pdMat Object
as.matrix.reStruct
Matrices of an reStruct Object
asOneFormula
Combine Formulas of a Set of Objects
Assay
Bioassay on Cell Culture Plate
asTable
Convert groupedData to a matrix
augPred
Augmented Predictions
balancedGrouped
Create a groupedData object from a matrix
bdf
Language scores
BodyWeight
Rat weight over time for different diets
Cefamandole
Pharmacokinetics of Cefamandole
Coef
Assign Values to Coefficients
coef.corStruct
Coefficients of a corStruct Object
coef.gnls
Extract gnls Coefficients
coef.lme
Extract lme Coefficients
coef.lmList
Extract lmList Coefficients
coef.modelStruct
Extract modelStruct Object Coefficients
coef.pdMat
pdMat Object Coefficients
coef.reStruct
reStruct Object Coefficients
coef.varFunc
varFunc Object Coefficients
collapse
Collapse According to Groups
collapse.groupedData
Collapse a groupedData Object
compareFits
Compare Fitted Objects
comparePred
Compare Predictions
corAR1
AR(1) Correlation Structure
corARMA
ARMA(p,q) Correlation Structure
corCAR1
Continuous AR(1) Correlation Structure
corClasses
Correlation Structure Classes
corCompSymm
Compound Symmetry Correlation Structure
corExp
Exponential Correlation Structure
corFactor
Factor of a Correlation Matrix
corFactor.corStruct
Factor of a corStruct Object Matrix
corGaus
Gaussian Correlation Structure
corLin
Linear Correlation Structure
corMatrix
Extract Correlation Matrix
corMatrix.corStruct
Matrix of a corStruct Object
corMatrix.pdMat
Extract Correlation Matrix from a pdMat Object
corMatrix.reStruct
Extract Correlation Matrix from Components of an reStruct...
corNatural
General correlation in natural parameterization
corRatio
Rational Quadratic Correlation Structure
corSpatial
Spatial Correlation Structure
corSpher
Spherical Correlation Structure
corSymm
General Correlation Structure
Covariate
Assign Covariate Values
Covariate.varFunc
Assign varFunc Covariate
Dialyzer
High-Flux Hemodialyzer
Dim
Extract Dimensions from an Object
Dim.corSpatial
Dimensions of a corSpatial Object
Dim.corStruct
Dimensions of a corStruct Object
Dim.pdMat
Dimensions of a pdMat Object
Earthquake
Earthquake Intensity
ergoStool
Ergometrics experiment with stool types
Extract.pdMat
Subscript a pdMat Object
Fatigue
Cracks caused by metal fatigue
fdHess
Finite difference Hessian
fitted.glsStruct
Calculate glsStruct Fitted Values
fitted.gnlsStruct
Calculate gnlsStruct Fitted Values
fitted.lme
Extract lme Fitted Values
fitted.lmeStruct
Calculate lmeStruct Fitted Values
fitted.lmList
Extract lmList Fitted Values
fitted.nlmeStruct
Calculate nlmeStruct Fitted Values
fixed.effects
Extract Fixed Effects
fixef.lmList
Extract lmList Fixed Effects
formula.pdBlocked
Extract pdBlocked Formula
formula.pdMat
Extract pdMat Formula
formula.reStruct
Extract reStruct Object Formula
gapply
Apply a Function by Groups
Gasoline
Refinery yield of gasoline
getCovariate
Extract Covariate from an Object
getCovariate.corStruct
Extract corStruct Object Covariate
getCovariate.data.frame
Extract Data Frame Covariate
getCovariateFormula
Extract Covariates Formula
getCovariate.varFunc
Extract varFunc Covariate
getData
Extract Data from an Object
getData.gls
Extract gls Object Data
getData.lme
Extract lme Object Data
getData.lmList
Extract lmList Object Data
getGroups
Extract Grouping Factors from an Object
getGroups.corStruct
Extract corStruct Groups
getGroups.data.frame
Extract Groups from a Data Frame
getGroupsFormula
Extract Grouping Formula
getGroups.gls
Extract gls Object Groups
getGroups.lme
Extract lme Object Groups
getGroups.lmList
Extract lmList Object Groups
getGroups.varFunc
Extract varFunc Groups
getResponse
Extract Response Variable from an Object
getResponseFormula
Extract Formula Specifying Response Variable
getVarCov
Extract variance-covariance matrix
gls
Fit Linear Model Using Generalized Least Squares
glsControl
Control Values for gls Fit
gls-internal
Auxiliary functions used by gls
glsObject
Fitted gls Object
glsStruct
Generalized Least Squares Structure
Glucose
Glucose levels over time
Glucose2
Glucose Levels Following Alcohol Ingestion
gnls
Fit Nonlinear Model Using Generalized Least Squares
gnlsControl
Control Values for gnls Fit
gnlsObject
Fitted gnls Object
gnlsStruct
Generalized Nonlinear Least Squares Structure
groupedData
Construct a groupedData Object
gsummary
Summarize by Groups
Gun
Methods for firing naval guns
IGF
Radioimmunoassay of IGF-I Protein
Initialize
Initialize Object
Initialize.corStruct
Initialize corStruct Object
Initialize.glsStruct
Initialize a glsStruct Object
Initialize.lmeStruct
Initialize an lmeStruct Object
Initialize.reStruct
Initialize reStruct Object
Initialize.varFunc
Initialize varFunc Object
intervals
Confidence Intervals on Coefficients
intervals.gls
Confidence Intervals on gls Parameters
intervals.lme
Confidence Intervals on lme Parameters
intervals.lmList
Confidence Intervals on lmList Coefficients
isBalanced
Check a Design for Balance
isInitialized
Check if Object is Initialized
LDEsysMat
Generate system matrix for LDEs
lme
Linear Mixed-Effects Models
lmeControl
Specifying Control Values for lme Fit
lme.groupedData
LME fit from groupedData Object
lme.lmList
LME fit from lmList Object
lmeObject
Fitted lme Object
lmeStruct
Linear Mixed-Effects Structure
lmList
List of lm Objects with a Common Model
lmList.groupedData
lmList Fit from a groupedData Object
logDet
Extract the Logarithm of the Determinant
logDet.corStruct
Extract corStruct Log-Determinant
logDet.pdMat
Extract Log-Determinant from a pdMat Object
logDet.reStruct
Extract reStruct Log-Determinants
logLik.corStruct
Extract corStruct Log-Likelihood
logLik.glsStruct
Log-Likelihood of a glsStruct Object
logLik.gnls
Log-Likelihood of a gnls Object
logLik.gnlsStruct
Log-Likelihood of a gnlsStruct Object
logLik.lme
Log-Likelihood of an lme Object
logLik.lmeStruct
Log-Likelihood of an lmeStruct Object
logLik.lmList
Log-Likelihood of an lmList Object
logLik.reStruct
Calculate reStruct Log-Likelihood
logLik.varFunc
Extract varFunc logLik
Machines
Productivity Scores for Machines and Workers
MathAchieve
Mathematics achievement scores
MathAchSchool
School demographic data for MathAchieve
Matrix
Assign Matrix Values
Matrix.pdMat
Assign Matrix to a pdMat or pdBlocked Object
Matrix.reStruct
Assign reStruct Matrices
Meat
Tenderness of meat
Milk
Protein content of cows' milk
model.matrix.reStruct
reStruct Model Matrix
Muscle
Contraction of heart muscle sections
Names
Names Associated with an Object
Names.formula
Extract Names from a formula
Names.pdBlocked
Names of a pdBlocked Object
Names.pdMat
Names of a pdMat Object
Names.reStruct
Names of an reStruct Object
needUpdate
Check if Update is Needed
needUpdate.modelStruct
Check if a modelStruct Object Needs Updating
Nitrendipene
Assay of nitrendipene
nlme
Nonlinear Mixed-Effects Models
nlmeControl
Control Values for nlme Fit
nlme.nlsList
NLME fit from nlsList Object
nlmeObject
Fitted nlme Object
nlmeStruct
Nonlinear Mixed-Effects Structure
nlsList
List of nls Objects with a Common Model
nlsList.selfStart
nlsList Fit from a selfStart Function
Oats
Split-plot Experiment on Varieties of Oats
Orthodont
Growth curve data on an orthdontic measurement
Ovary
Counts of Ovarian Follicles
Oxboys
Heights of Boys in Oxford
Oxide
Variability in Semiconductor Manufacturing
pairs.compareFits
Pairs Plot of compareFits Object
pairs.lme
Pairs Plot of an lme Object
pairs.lmList
Pairs Plot of an lmList Object
PBG
Effect of Phenylbiguanide on Blood Pressure
pdBlocked
Positive-Definite Block Diagonal Matrix
pdClasses
Positive-Definite Matrix Classes
pdCompSymm
Positive-Definite Matrix with Compound Symmetry Structure
pdConstruct
Construct pdMat Objects
pdConstruct.pdBlocked
Construct pdBlocked Objects
pdDiag
Diagonal Positive-Definite Matrix
pdFactor
Square-Root Factor of a Positive-Definite Matrix
pdFactor.reStruct
Extract Square-Root Factor from Components of an reStruct...
pdIdent
Multiple of the Identity Positive-Definite Matrix
pdLogChol
General Positive-Definite Matrix
pdMat
Positive-Definite Matrix
pdMatrix
Extract Matrix or Square-Root Factor from a pdMat Object
pdMatrix.reStruct
Extract Matrix or Square-Root Factor from Components of an...
pdNatural
General Positive-Definite Matrix in Natural Parametrization
pdSymm
General Positive-Definite Matrix
Phenobarb
Phenobarbitol Kinetics
phenoModel
Model function for the Phenobarb data
Pixel
X-ray pixel intensities over time
plot.ACF
Plot an ACF Object
plot.augPred
Plot an augPred Object
plot.compareFits
Plot a compareFits Object
plot.gls
Plot a gls Object
plot.intervals.lmList
Plot lmList Confidence Intervals
plot.lme
Plot an lme or nls object
plot.lmList
Plot an lmList Object
plot.nffGroupedData
Plot an nffGroupedData Object
plot.nfnGroupedData
Plot an nfnGroupedData Object
plot.nmGroupedData
Plot an nmGroupedData Object
plot.ranef.lme
Plot a ranef.lme Object
plot.ranef.lmList
Plot a ranef.lmList Object
plot.Variogram
Plot a Variogram Object
pooledSD
Extract Pooled Standard Deviation
predict.gls
Predictions from a gls Object
predict.gnls
Predictions from a gnls Object
predict.lme
Predictions from an lme Object
predict.lmList
Predictions from an lmList Object
predict.nlme
Predictions from an nlme Object
print.summary.pdMat
Print a summary.pdMat Object
print.varFunc
Print a varFunc Object
qqnorm.gls
Normal Plot of Residuals from a gls Object
qqnorm.lme
Normal Plot of Residuals or Random Effects from an lme Object
Quinidine
Quinidine Kinetics
quinModel
Model function for the Quinidine data
Rail
Evaluation of Stress in Railway Rails
random.effects
Extract Random Effects
ranef.lme
Extract lme Random Effects
ranef.lmList
Extract lmList Random Effects
RatPupWeight
The weight of rat pups
recalc
Recalculate Condensed Linear Model Object
recalc.corStruct
Recalculate for corStruct Object
recalc.modelStruct
Recalculate for a modelStruct Object
recalc.reStruct
Recalculate for an reStruct Object
recalc.varFunc
Recalculate for varFunc Object
Relaxin
Assay for Relaxin
Remifentanil
Pharmacokinetics of remifentanil
residuals.gls
Extract gls Residuals
residuals.glsStruct
Calculate glsStruct Residuals
residuals.gnlsStruct
Calculate gnlsStruct Residuals
residuals.lme
Extract lme Residuals
residuals.lmeStruct
Calculate lmeStruct Residuals
residuals.lmList
Extract lmList Residuals
residuals.nlmeStruct
Calculate nlmeStruct Residuals
reStruct
Random Effects Structure
simulate.lme
Simulate Results from 'lme' Models
solve.pdMat
Calculate Inverse of a Positive-Definite Matrix
solve.reStruct
Apply Solve to an reStruct Object
Soybean
Growth of soybean plants
splitFormula
Split a Formula
Spruce
Growth of Spruce Trees
summary.corStruct
Summarize a corStruct Object
summary.gls
Summarize a Generalized Least Squares 'gls' Object
summary.lme
Summarize an lme Object
summary.lmList
Summarize an lmList Object
summary.modelStruct
Summarize a modelStruct Object
summary.nlsList
Summarize an nlsList Object
summary.pdMat
Summarize a pdMat Object
summary.varFunc
Summarize varFunc Object
Tetracycline1
Pharmacokinetics of tetracycline
Tetracycline2
Pharmacokinetics of tetracycline
update.modelStruct
Update a modelStruct Object
update.varFunc
Update varFunc Object
varClasses
Variance Function Classes
varComb
Combination of Variance Functions
varConstPower
Constant Plus Power Variance Function
VarCorr
Extract variance and correlation components
varExp
Exponential Variance Function
varFixed
Fixed Variance Function
varFunc
Variance Function Structure
varIdent
Constant Variance Function
Variogram
Calculate Semi-variogram
Variogram.corExp
Calculate Semi-variogram for a corExp Object
Variogram.corGaus
Calculate Semi-variogram for a corGaus Object
Variogram.corLin
Calculate Semi-variogram for a corLin Object
Variogram.corRatio
Calculate Semi-variogram for a corRatio Object
Variogram.corSpatial
Calculate Semi-variogram for a corSpatial Object
Variogram.corSpher
Calculate Semi-variogram for a corSpher Object
Variogram.default
Calculate Semi-variogram
Variogram.gls
Calculate Semi-variogram for Residuals from a gls Object
Variogram.lme
Calculate Semi-variogram for Residuals from an lme Object
varPower
Power Variance Function
varWeights
Extract Variance Function Weights
varWeights.glsStruct
Variance Weights for glsStruct Object
varWeights.lmeStruct
Variance Weights for lmeStruct Object
Wafer
Modeling of Analog MOS Circuits
Wheat
Yields by growing conditions
Wheat2
Wheat Yield Trials

Files in this package

nlme
nlme/TODO
nlme/po
nlme/po/R-fr.po
nlme/po/de.po
nlme/po/R-nlme.pot
nlme/po/pl.po
nlme/po/R-de.po
nlme/po/fr.po
nlme/po/ko.po
nlme/po/nlme.pot
nlme/po/R-pl.po
nlme/po/R-ko.po
nlme/inst
nlme/inst/po
nlme/inst/po/pl
nlme/inst/po/pl/LC_MESSAGES
nlme/inst/po/pl/LC_MESSAGES/R-nlme.mo
nlme/inst/po/pl/LC_MESSAGES/nlme.mo
nlme/inst/po/en@quot
nlme/inst/po/en@quot/LC_MESSAGES
nlme/inst/po/en@quot/LC_MESSAGES/R-nlme.mo
nlme/inst/po/en@quot/LC_MESSAGES/nlme.mo
nlme/inst/po/ko
nlme/inst/po/ko/LC_MESSAGES
nlme/inst/po/ko/LC_MESSAGES/R-nlme.mo
nlme/inst/po/ko/LC_MESSAGES/nlme.mo
nlme/inst/po/fr
nlme/inst/po/fr/LC_MESSAGES
nlme/inst/po/fr/LC_MESSAGES/R-nlme.mo
nlme/inst/po/fr/LC_MESSAGES/nlme.mo
nlme/inst/po/de
nlme/inst/po/de/LC_MESSAGES
nlme/inst/po/de/LC_MESSAGES/R-nlme.mo
nlme/inst/po/de/LC_MESSAGES/nlme.mo
nlme/inst/CITATION
nlme/inst/scripts
nlme/inst/scripts/sims.rda
nlme/inst/scripts/ch01.R
nlme/inst/scripts/ch02.R
nlme/inst/scripts/ch06.R
nlme/inst/scripts/runme.R
nlme/inst/scripts/ch05.R
nlme/inst/scripts/ch08.R
nlme/inst/scripts/ch04.R
nlme/inst/scripts/ch03.R
nlme/inst/mlbook
nlme/inst/mlbook/README
nlme/inst/mlbook/ch05.R
nlme/inst/mlbook/ch04.R
nlme/tests
nlme/tests/anova.gls.R
nlme/tests/nlme.R
nlme/tests/nlme2.R
nlme/tests/lme.Rout.save
nlme/tests/data.frame.R
nlme/tests/missing.R
nlme/tests/contrMat.R
nlme/tests/fitted.R
nlme/tests/predict.lme.R
nlme/tests/augPredmissing.R
nlme/tests/coef.R
nlme/tests/deparse.R
nlme/tests/augPred_lab.R
nlme/tests/ss2.rda
nlme/tests/varIdent.R
nlme/tests/coef.Rout.save
nlme/tests/updateLme.R
nlme/tests/missing.Rout.save
nlme/tests/sigma-fixed-etc.R
nlme/tests/getData.R
nlme/tests/lmList.R
nlme/tests/gls.R
nlme/tests/lme.R
nlme/src
nlme/src/rs.f
nlme/src/matrix.c
nlme/src/Makevars
nlme/src/pdMat.h
nlme/src/nlOptimizer.h
nlme/src/base.h
nlme/src/nlmefit.h
nlme/src/nlme.c
nlme/src/chol.f
nlme/src/nlmefit.c
nlme/src/pdMat.c
nlme/src/nlOptimizer.c
nlme/src/gnls.c
nlme/src/init.c
nlme/src/corStruct.c
nlme/src/matrix.h
nlme/NAMESPACE
nlme/data
nlme/data/Cefamandole.rda
nlme/data/Quinidine.rda
nlme/data/Gun.rda
nlme/data/Relaxin.rda
nlme/data/Orthodont.rda
nlme/data/Ovary.rda
nlme/data/Tetracycline1.rda
nlme/data/Remifentanil.rda
nlme/data/PBG.rda
nlme/data/Phenobarb.rda
nlme/data/Assay.rda
nlme/data/BodyWeight.rda
nlme/data/Machines.rda
nlme/data/Glucose2.rda
nlme/data/Earthquake.rda
nlme/data/Milk.rda
nlme/data/Wheat.rda
nlme/data/bdf.rda
nlme/data/Oxboys.rda
nlme/data/Muscle.rda
nlme/data/Alfalfa.rda
nlme/data/Wheat2.rda
nlme/data/IGF.rda
nlme/data/MathAchieve.rda
nlme/data/Fatigue.rda
nlme/data/Pixel.rda
nlme/data/Nitrendipene.rda
nlme/data/Gasoline.rda
nlme/data/ergoStool.rda
nlme/data/Rail.rda
nlme/data/Tetracycline2.rda
nlme/data/Soybean.rda
nlme/data/MathAchSchool.rda
nlme/data/Wafer.rda
nlme/data/Dialyzer.rda
nlme/data/Oats.rda
nlme/data/Spruce.rda
nlme/data/Glucose.rda
nlme/data/Oxide.rda
nlme/data/RatPupWeight.rda
nlme/data/Meat.rda
nlme/R
nlme/R/groupedData.R
nlme/R/gnls.R
nlme/R/zzMethods.R
nlme/R/nlme.R
nlme/R/newMethods.R
nlme/R/corStruct.R
nlme/R/newGenerics.R
nlme/R/nlsList.R
nlme/R/reStruct.R
nlme/R/modelStruct.R
nlme/R/VarCov.R
nlme/R/varFunc.R
nlme/R/pdMat.R
nlme/R/simulate.R
nlme/R/newFunc.R
nlme/R/VarCorr.R
nlme/R/lmList.R
nlme/R/gls.R
nlme/R/lme.R
nlme/MD5
nlme/README
nlme/DESCRIPTION
nlme/LICENCE
nlme/ChangeLog
nlme/man
nlme/man/getGroups.gls.Rd
nlme/man/plot.gls.Rd
nlme/man/summary.pdMat.Rd
nlme/man/getGroupsFormula.Rd
nlme/man/pdIdent.Rd
nlme/man/summary.gls.Rd
nlme/man/corMatrix.reStruct.Rd
nlme/man/Coef.Rd
nlme/man/Tetracycline1.Rd
nlme/man/getData.lmList.Rd
nlme/man/Dim.corStruct.Rd
nlme/man/varExp.Rd
nlme/man/gnls.Rd
nlme/man/VarCorr.Rd
nlme/man/pdMat.Rd
nlme/man/getData.lme.Rd
nlme/man/pdConstruct.Rd
nlme/man/as.matrix.pdMat.Rd
nlme/man/Names.Rd
nlme/man/ACF.gls.Rd
nlme/man/coef.reStruct.Rd
nlme/man/coef.pdMat.Rd
nlme/man/collapse.groupedData.Rd
nlme/man/residuals.lmList.Rd
nlme/man/recalc.varFunc.Rd
nlme/man/Initialize.Rd
nlme/man/pdMatrix.Rd
nlme/man/corSpher.Rd
nlme/man/Glucose2.Rd
nlme/man/Dim.corSpatial.Rd
nlme/man/Variogram.corRatio.Rd
nlme/man/plot.ranef.lmList.Rd
nlme/man/getCovariate.corStruct.Rd
nlme/man/LDEsysMat.Rd
nlme/man/update.modelStruct.Rd
nlme/man/coef.varFunc.Rd
nlme/man/pdDiag.Rd
nlme/man/corCAR1.Rd
nlme/man/logDet.corStruct.Rd
nlme/man/summary.lme.Rd
nlme/man/logLik.reStruct.Rd
nlme/man/plot.nffGroupedData.Rd
nlme/man/lmList.Rd
nlme/man/Meat.Rd
nlme/man/pdCompSymm.Rd
nlme/man/Variogram.corSpatial.Rd
nlme/man/ergoStool.Rd
nlme/man/Relaxin.Rd
nlme/man/recalc.modelStruct.Rd
nlme/man/summary.modelStruct.Rd
nlme/man/asOneFormula.Rd
nlme/man/coef.lmList.Rd
nlme/man/compareFits.Rd
nlme/man/Matrix.reStruct.Rd
nlme/man/plot.compareFits.Rd
nlme/man/Variogram.corExp.Rd
nlme/man/varComb.Rd
nlme/man/lmList.groupedData.Rd
nlme/man/corMatrix.pdMat.Rd
nlme/man/pdSymm.Rd
nlme/man/lme.lmList.Rd
nlme/man/predict.lme.Rd
nlme/man/gls-internal.Rd
nlme/man/varConstPower.Rd
nlme/man/residuals.glsStruct.Rd
nlme/man/qqnorm.lme.Rd
nlme/man/formula.reStruct.Rd
nlme/man/residuals.gls.Rd
nlme/man/lmeControl.Rd
nlme/man/BodyWeight.Rd
nlme/man/coef.gnls.Rd
nlme/man/Machines.Rd
nlme/man/Names.reStruct.Rd
nlme/man/plot.Variogram.Rd
nlme/man/Dialyzer.Rd
nlme/man/fitted.lmeStruct.Rd
nlme/man/gnlsStruct.Rd
nlme/man/getGroups.Rd
nlme/man/Initialize.glsStruct.Rd
nlme/man/Matrix.pdMat.Rd
nlme/man/varWeights.glsStruct.Rd
nlme/man/nlmeStruct.Rd
nlme/man/plot.lme.Rd
nlme/man/Glucose.Rd
nlme/man/Names.pdBlocked.Rd
nlme/man/logLik.lmeStruct.Rd
nlme/man/summary.corStruct.Rd
nlme/man/corRatio.Rd
nlme/man/predict.gnls.Rd
nlme/man/glsStruct.Rd
nlme/man/varIdent.Rd
nlme/man/qqnorm.gls.Rd
nlme/man/Wheat2.Rd
nlme/man/fdHess.Rd
nlme/man/recalc.reStruct.Rd
nlme/man/glsControl.Rd
nlme/man/Tetracycline2.Rd
nlme/man/Names.formula.Rd
nlme/man/phenoModel.Rd
nlme/man/corCompSymm.Rd
nlme/man/Nitrendipene.Rd
nlme/man/logLik.varFunc.Rd
nlme/man/MathAchieve.Rd
nlme/man/asTable.Rd
nlme/man/nlsList.selfStart.Rd
nlme/man/Variogram.corGaus.Rd
nlme/man/summary.nlsList.Rd
nlme/man/Variogram.corSpher.Rd
nlme/man/formula.pdBlocked.Rd
nlme/man/lme.groupedData.Rd
nlme/man/Fatigue.Rd
nlme/man/Spruce.Rd
nlme/man/coef.lme.Rd
nlme/man/varWeights.Rd
nlme/man/pdNatural.Rd
nlme/man/lmeStruct.Rd
nlme/man/nlmeObject.Rd
nlme/man/as.matrix.corStruct.Rd
nlme/man/predict.nlme.Rd
nlme/man/Alfalfa.Rd
nlme/man/pdConstruct.pdBlocked.Rd
nlme/man/Phenobarb.Rd
nlme/man/groupedData.Rd
nlme/man/print.varFunc.Rd
nlme/man/corMatrix.corStruct.Rd
nlme/man/corExp.Rd
nlme/man/predict.gls.Rd
nlme/man/pooledSD.Rd
nlme/man/residuals.nlmeStruct.Rd
nlme/man/Oats.Rd
nlme/man/corClasses.Rd
nlme/man/Wheat.Rd
nlme/man/Covariate.varFunc.Rd
nlme/man/getCovariate.data.frame.Rd
nlme/man/getCovariate.Rd
nlme/man/pdBlocked.Rd
nlme/man/coef.modelStruct.Rd
nlme/man/varClasses.Rd
nlme/man/corAR1.Rd
nlme/man/Pixel.Rd
nlme/man/anova.gls.Rd
nlme/man/augPred.Rd
nlme/man/residuals.lme.Rd
nlme/man/Muscle.Rd
nlme/man/pairs.lme.Rd
nlme/man/nlsList.Rd
nlme/man/PBG.Rd
nlme/man/nlme.nlsList.Rd
nlme/man/varFunc.Rd
nlme/man/Variogram.corLin.Rd
nlme/man/corARMA.Rd
nlme/man/simulate.lme.Rd
nlme/man/getCovariate.varFunc.Rd
nlme/man/MathAchSchool.Rd
nlme/man/Variogram.default.Rd
nlme/man/plot.ranef.lme.Rd
nlme/man/plot.lmList.Rd
nlme/man/intervals.gls.Rd
nlme/man/getData.gls.Rd
nlme/man/Variogram.gls.Rd
nlme/man/Matrix.Rd
nlme/man/getVarCov.Rd
nlme/man/print.summary.pdMat.Rd
nlme/man/corSpatial.Rd
nlme/man/corNatural.Rd
nlme/man/quinModel.Rd
nlme/man/logLik.gnlsStruct.Rd
nlme/man/intervals.lmList.Rd
nlme/man/logLik.glsStruct.Rd
nlme/man/corFactor.Rd
nlme/man/Covariate.Rd
nlme/man/gapply.Rd
nlme/man/ACF.lme.Rd
nlme/man/gnlsObject.Rd
nlme/man/fitted.lme.Rd
nlme/man/logLik.gnls.Rd
nlme/man/IGF.Rd
nlme/man/lmeObject.Rd
nlme/man/fitted.glsStruct.Rd
nlme/man/lme.Rd
nlme/man/logDet.reStruct.Rd
nlme/man/plot.nmGroupedData.Rd
nlme/man/Milk.Rd
nlme/man/Initialize.corStruct.Rd
nlme/man/Cefamandole.Rd
nlme/man/getResponse.Rd
nlme/man/getGroups.lme.Rd
nlme/man/getGroups.varFunc.Rd
nlme/man/logLik.corStruct.Rd
nlme/man/solve.reStruct.Rd
nlme/man/needUpdate.Rd
nlme/man/Initialize.reStruct.Rd
nlme/man/fitted.lmList.Rd
nlme/man/Remifentanil.Rd
nlme/man/summary.varFunc.Rd
nlme/man/corLin.Rd
nlme/man/fixed.effects.Rd
nlme/man/Dim.Rd
nlme/man/formula.pdMat.Rd
nlme/man/pairs.compareFits.Rd
nlme/man/Oxboys.Rd
nlme/man/recalc.Rd
nlme/man/logDet.Rd
nlme/man/isInitialized.Rd
nlme/man/solve.pdMat.Rd
nlme/man/getResponseFormula.Rd
nlme/man/Oxide.Rd
nlme/man/pdClasses.Rd
nlme/man/gsummary.Rd
nlme/man/pairs.lmList.Rd
nlme/man/Extract.pdMat.Rd
nlme/man/intervals.Rd
nlme/man/corGaus.Rd
nlme/man/Rail.Rd
nlme/man/Initialize.varFunc.Rd
nlme/man/corFactor.corStruct.Rd
nlme/man/Initialize.lmeStruct.Rd
nlme/man/Soybean.Rd
nlme/man/pdLogChol.Rd
nlme/man/isBalanced.Rd
nlme/man/update.varFunc.Rd
nlme/man/reStruct.Rd
nlme/man/logLik.lme.Rd
nlme/man/gls.Rd
nlme/man/comparePred.Rd
nlme/man/allCoef.Rd
nlme/man/RatPupWeight.Rd
nlme/man/residuals.lmeStruct.Rd
nlme/man/collapse.Rd
nlme/man/logLik.lmList.Rd
nlme/man/Gun.Rd
nlme/man/recalc.corStruct.Rd
nlme/man/logDet.pdMat.Rd
nlme/man/pdMatrix.reStruct.Rd
nlme/man/Ovary.Rd
nlme/man/pdFactor.Rd
nlme/man/ACF.Rd
nlme/man/predict.lmList.Rd
nlme/man/coef.corStruct.Rd
nlme/man/varPower.Rd
nlme/man/ranef.lme.Rd
nlme/man/Gasoline.Rd
nlme/man/plot.nfnGroupedData.Rd
nlme/man/Variogram.lme.Rd
nlme/man/Variogram.Rd
nlme/man/summary.lmList.Rd
nlme/man/anova.lme.Rd
nlme/man/residuals.gnlsStruct.Rd
nlme/man/fitted.gnlsStruct.Rd
nlme/man/plot.augPred.Rd
nlme/man/getCovariateFormula.Rd
nlme/man/Earthquake.Rd
nlme/man/pdFactor.reStruct.Rd
nlme/man/plot.intervals.lmList.Rd
nlme/man/bdf.Rd
nlme/man/fixef.lmList.Rd
nlme/man/corMatrix.Rd
nlme/man/model.matrix.reStruct.Rd
nlme/man/corSymm.Rd
nlme/man/glsObject.Rd
nlme/man/getData.Rd
nlme/man/Dim.pdMat.Rd
nlme/man/plot.ACF.Rd
nlme/man/ranef.lmList.Rd
nlme/man/nlme.Rd
nlme/man/varFixed.Rd
nlme/man/Quinidine.Rd
nlme/man/fitted.nlmeStruct.Rd
nlme/man/getGroups.data.frame.Rd
nlme/man/getGroups.corStruct.Rd
nlme/man/Wafer.Rd
nlme/man/getGroups.lmList.Rd
nlme/man/splitFormula.Rd
nlme/man/Names.pdMat.Rd
nlme/man/gnlsControl.Rd
nlme/man/varWeights.lmeStruct.Rd
nlme/man/intervals.lme.Rd
nlme/man/random.effects.Rd
nlme/man/Assay.Rd
nlme/man/as.matrix.reStruct.Rd
nlme/man/Orthodont.Rd
nlme/man/balancedGrouped.Rd
nlme/man/needUpdate.modelStruct.Rd
nlme/man/nlmeControl.Rd
nlme/INDEX