tests/testthat/test_getErrorTab.R

In nprcgenekeepr: Genetic Tools for Colony Management

#' Copyright(c) 2017-2024 R. Mark Sharp
#' This file is part of nprcgenekeepr
context("getErrorTab")
library(testthat)
library(lubridate)
library(stringi)

set_seed(10L)
pedOne <- data.frame(
  ego_id = c("s1", "d1", "s2", "d2", "o1", "o2", "o3", "o4"),
  `si re` = c(NA, NA, NA, NA, "s1", "s1", "s2", "s2"),
  dam_id = c(NA, NA, NA, NA, "d1", "d2", "d2", "d2"),
  sex = c("F", "M", "M", "F", "F", "F", "F", "M"),
  birth_date = mdy(
    paste0(
      sample(1L:12L, 8L, replace = TRUE), "-",
      sample(1L:28L, 8L, replace = TRUE), "-",
      sample(seq(0L, 15L, by = 3L), 8L, replace = TRUE) +
        2000L
    )
  ),
  stringsAsFactors = FALSE, check.names = FALSE
)
errorTab <- getErrorTab(qcStudbook(pedOne,
  reportChanges = TRUE,
  reportErrors = TRUE
), "test")
test_that("getErrorTab creates predictable output", {
  expect_true(stri_detect_fixed(errorTab$children[[1]]$children[[1L]],
    pattern = "egoid to id"
  ))
})