Man pages for o2geosocial
Reconstruction of Transmission Chains from Surveillance Data
| create_config | Set and check parameter settings |
| create_param | Initializes outputs for outbreaker |
| custom_likelihoods | Customise likelihood functions for o2geosocial |
| custom_moves | Customise samplers for outbreaker |
| custom_priors | Customise priors for outbreaker |
| outbreaker | outbreaker: main function for reconstructing disease... |
| outbreaker_chains | Basic methods for processing outbreaker results |
| outbreaker_data | Process input data for outbreaker |
| pre_clustering | Pre cluster cases in groups according using the genotypes and... |
| toy_outbreak_long | Simulated outbreaks |
| toy_outbreak_short | Simulated outbreaks |
