toy_outbreak_short: Simulated outbreaks

In o2geosocial: Reconstruction of Transmission Chains from Surveillance Data

Simulated outbreaks

Description

Second dataset used to illustrate o2geosocial. (toy_outbreak_short) is a smaller data set (75 cases), spread across different Census tracks in Ohio (population and location of each region taken from https://www.census.gov/geographies/reference-files/2010/geo/2010-centers-population.html). The list contains the following:

Usage

toy_outbreak_short

Format

An object of class list of length 3.

Details

• $cases: A data table summarising the epidemiological features of the 75 cases. It contains the ID, state, onset date, genotype, Census tract, age group, import status, cluster, generation and infector of the cases.

• $dt_regions: A data table containing the ID, population, longitude and latitude of each region. Should be used to compute the distance matrix, using the package geosphere.

• $age_contact: A matrix indicating the number of contacts between age groups

Author(s)

Alexis Robert [e-mail]

Examples

data("toy_outbreak_short")
names(toy_outbreak_short)
toy_outbreak_short

o2geosocial documentation built on June 22, 2024, 10:18 a.m.