pre_clustering: Pre cluster cases in groups according using the genotypes and...
In o2geosocial: Reconstruction of Transmission Chains from Surveillance Data

pre_clustering

R Documentation

Pre cluster cases in groups according using the genotypes and the arbitrary thresholds gamma (spatial) and delta (temporal).

Description

This function updates the clusters and the initial tree in the lists data and config

Usage

pre_clustering(data, config)

Arguments

`data`	A list of data items as returned by `outbreaker_data`, or arguments passed to this function.
`config`	A list of settings as returned by `create_config`, or arguments passed to this function.

Value

A named list containing two components $data and $config. data data items as returned by outbreaker_data. config is a list of settings as returned by create_config.