pre_clustering: Pre cluster cases in groups according using the genotypes and...
In o2geosocial: Reconstruction of Transmission Chains from Surveillance Data

Description Usage Arguments Value Author(s)

This function updates the clusters and the initial tree in the lists data and config

1	pre_clustering(data, config)

`data`	A list of data items as returned by `outbreaker_data`, or arguments passed to this function.
`config`	A list of settings as returned by `create_config`, or arguments passed to this function.

A named list containing two components $data and $config. data data items as returned by outbreaker_data. config is a list of settings as returned by create_config.

Alexis Robert (alexis.robert@lshtm.ac.uk)

o2geosocial documentation built on Sept. 11, 2021, 9:07 a.m.