Man pages for occTest
Characterizing and Filtering Species Occurrence Data
| centroid_assessment | Centroid assessment using BIEN methods |
| centroidDetection | Centroid detection function |
| countryStatusRangeAnalysis | Range analysis |
| ctryToIso3 | Convert country names to ISO3 codes |
| defaultSettings | load default settings for occTest |
| dot-addmainfields2 | Add main fields |
| dot-ah2sp | Convert Alpha Hull object into a shapefile |
| dot-cc_outl_occTest | Identify geographic outliers based on methods from... |
| dot-cc_round_occTest | Flag records with regular pattern interval |
| dot-cc_urb_occTest | Flag values in urban areas (based on coordinate cleaner but... |
| dot-cd_ddmm_occTest | Flag records with regular pattern interval |
| dot-checkdatastr2 | Check data structure |
| dot-checkfields | Checking main fields |
| dot-check.geospatial.data | Checks on the projection of the spatial data |
| dot-checkPolygonsGEOS2 | Check polygon geometry |
| dot-coords2country | Extracts country ISO3 based on locations |
| dot-find_and_transform_dates | Identify and harmonize data formats |
| dot-get_os | Identify type of Operative system |
| dot-getSRTM | Download SRTM elevation raster |
| dot-nearestcell3 | SeaLand reassignment |
| dot-ne_download_occTest | Download quitely from neearth data (modified from original... |
| dot-status.tracker.and.escaping | Workflow status tracker |
| duplicatesexcludeAnalysis | Duplicated records |
| envOutliers | Detect environmental outliers |
| filterMissing | Check for missing coordinates |
| findEnvOutliers | Find outlying occurrence data in environmental space |
| findSpatialOutliers | Find outlying occurrence data in geographical space |
| geoEnvAccuracy | Coordinate accuracy |
| geoOutliers | Detect geographic outliers |
| get_occTest_settings | Get occTest Settings |
| getPointsOutAlphaHull | Generate Spatial object from Alpha Hull object |
| humanDetection | Hyper Human Influence |
| institutionLocality | Detect biodiversity institutions |
| landSeaFilter | Filter occurrence by habitat (terrestrial/non-Terrestrial) |
| landUseSelect | Selection of records within a specified land use |
| lazylogic | a lazy logic omitting NAs |
| minimalSettings | Load minimal settings for occTest |
| nativeStatusCtry | Check native and alien ranges in countries |
| occFilter | Filter occurrence records from occTest outputs |
| occSimpFilter | Runs tests and validates data |
| occTest | Occurrence tests |
| plot.occTest | Display the filtering process |
| presPercentile | Identify percentile of presences |
| rm.all | Remove all objects |
| setTableNames | set table names internally |
| setTestBlocks | Set the tests to run |
| setTestTypes | Set the tests to run |
| showTableNames | Print naming conventions in occTest |
| showTests | Show implemented tests and types of tests |
| splitSpname | Split joined species name |
