centroid_assessment | Centroid assessment using BIEN methods |
centroidDetection | Centroid detection function |
countryStatusRangeAnalysis | Range analysis |
ctryToIso3 | Convert country names to ISO3 codes |
defaultSettings | load default settings for occTest |
dot-addmainfields2 | Add main fields |
dot-ah2sp | Convert Alpha Hull object into a shapefile |
dot-cc_outl_occTest | Identify geographic outliers based on methods from... |
dot-cc_round_occTest | Flag records with regular pattern interval |
dot-cc_urb_occTest | Flag values in urban areas (based on coordinate cleaner but... |
dot-cd_ddmm_occTest | Flag records with regular pattern interval |
dot-checkdatastr2 | Check data structure |
dot-checkfields | Checking main fields |
dot-check.geospatial.data | Checks on the projection of the spatial data |
dot-checkPolygonsGEOS2 | Check polygon geometry |
dot-coords2country | Extracts country ISO3 based on locations |
dot-find_and_transform_dates | Identify and harmonize data formats |
dot-get_os | Identify type of Operative system |
dot-getSRTM | Download SRTM elevation raster |
dot-nearestcell3 | SeaLand reassignment |
dot-ne_download_occTest | Download quitely from neearth data (modified from original... |
dot-status.tracker.and.escaping | Workflow status tracker |
duplicatesexcludeAnalysis | Duplicated records |
envOutliers | Detect environmental outliers |
filterMissing | Check for missing coordinates |
findEnvOutliers | Find outlying occurrence data in environmental space |
findSpatialOutliers | Find outlying occurrence data in geographical space |
geoEnvAccuracy | Coordinate accuracy |
geoOutliers | Detect geographic outliers |
get_occTest_settings | Get occTest Settings |
getPointsOutAlphaHull | Generate Spatial object from Alpha Hull object |
humanDetection | Hyper Human Influence |
institutionLocality | Detect biodiversity institutions |
landSeaFilter | Filter occurrence by habitat (terrestrial/non-Terrestrial) |
landUseSelect | Selection of records within a specified land use |
lazylogic | a lazy logic omitting NAs |
minimalSettings | Load minimal settings for occTest |
nativeStatusCtry | Check native and alien ranges in countries |
occFilter | Filter occurrence records from occTest outputs |
occSimpFilter | Runs tests and validates data |
occTest | Occurrence tests |
plot.occTest | Display the filtering process |
presPercentile | Identify percentile of presences |
rm.all | Remove all objects |
setTableNames | set table names internally |
setTestBlocks | Set the tests to run |
setTestTypes | Set the tests to run |
showTableNames | Print naming conventions in occTest |
showTests | Show implemented tests and types of tests |
splitSpname | Split joined species name |
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