nativeStatusCtry: Check native and alien ranges in countries

In occTest: Characterizing and Filtering Species Occurrence Data

Check native and alien ranges in countries

Description

performs several queries based on the orignir package to identify native and invasive range status for a given species

Usage

nativeStatusCtry(
  spName,
  xydat,
  resolveNative = TRUE,
  resolveAlien = TRUE,
  verbose = TRUE
)

Arguments

spName	character. Species name in the form of Genus species
xydat	dataframe Species longitude latitude coordinates.
resolveNative	logical. Should the function attempt to find countries where species are considered native?
resolveAlien	logical. Should the function attempt to find countries where species are considered introduced?
verbose	logical. Want to print information during the process?

Details

right now based on the package originr, which queries on Flora Europea, GISD or Native species resolver. Future implementation may query more databases.

Value

list with two vectors: ntvCtry and invCtry, showing the countries in ISO3 standard codes

Author(s)

Josep M Serra-Diaz ([e-mail])

See Also

Other spStatus: ctryToIso3()

Examples

#needs spocc library
df <- spocc::occ(query = 'Pseudotsuga menziesii')
occ.data <- spocc::occ2df(df)
nativeStatusCtry(spName = 'Pseudotsuga menziesii',xydat = occ.data[,2:3])

occTest documentation built on Nov. 18, 2022, 5:07 p.m.