dot-cc_urb_occTest: Flag values in urban areas (based on coordinate cleaner but...

In occTest: Characterizing and Filtering Species Occurrence Data

Flag values in urban areas (based on coordinate cleaner but modified for occTest to deliver it quitely)

Description

flags values for urban areas

Usage

.cc_urb_occTest(
  x,
  lon = "decimallongitude",
  lat = "decimallatitude",
  ref = NULL,
  value = "clean",
  verbose = FALSE,
  outdir
)

Arguments

x	Data.frame of species occurrences
lon	character. Column name in x with decimal longitude values
lat	character. Column name in x with decimal latitude values
value	character string. Defining the output value. See value.
verbose	logical. If TRUE reports the name of the test and the number of records flagged
outdir	output directory
a	SpatialPolygonsDataFrame. Providing the geographic gazetteer with the urban areas. See details. By default rnaturalearth::ne_download(scale = 'medium', type = 'urban_areas'). Can be any SpatialPolygonsDataframe, but the structure must be identical to rnaturalearth::ne_download().

Value

a clean data.frame

Author(s)

A Zizka (original function) Josep M Serra-Diaz (adaptation to occTest [e-mail])

References

CoordinateCleaner package

See Also

cc_urb

occTest documentation built on Nov. 18, 2022, 5:07 p.m.