GSE79262small: Small Subset of GSE79262 Dataset From GEO

In omicwas: Cell-Type-Specific Association Testing in Bulk Omics Experiments

Description

The dataset includes 53 samples. A subset of 737 CpG sites and 3624 SNPs within Chr1:100,000,000-110,000,000 were selected from the original EWAS dataset. DNA methylation was measured in T cells. The estimated proportion of CD4T, CD8T, NK cells are saved in W.

Usage

data(GSE79262small)

Format

An object of class list of length 6.

Source

GEO

See Also

ctcisQTL

Examples

data(GSE79262small)
X    = GSE79262small$X
Xpos = GSE79262small$Xpos
W    = GSE79262small$W
Y    = GSE79262small$Y
Ypos = GSE79262small$Ypos
C    = GSE79262small$C
X    = X[seq(1, 3001, 100), ] # for brevity
Xpos = Xpos[seq(1, 3001, 100)]
Y    = Y[seq(1, 501, 100), ]
Ypos = Ypos[seq(1, 501, 100)]
ctcisQTL(X, Xpos, W, Y, Ypos, C = C)

omicwas documentation built on Jan. 13, 2021, 8:48 a.m.