bind.cohort_table: Bind two or more cohort tables

In omopgenerics: Methods and Classes for the OMOP Common Data Model

Bind two or more cohort tables

Description

Bind two or more cohort tables

Usage

## S3 method for class 'cohort_table'
bind(..., name)

Arguments

...	Generated cohort set objects to bind. At least two must be provided.
name	Name of the new generated cohort set.

Value

The cdm object with a new generated cohort set containing all of the cohorts passed.

Examples

library(omopgenerics)
library(dplyr, warn.conflicts = FALSE)

cohort1 <- tibble(
  cohort_definition_id = 1,
  subject_id = 1:3,
  cohort_start_date = as.Date("2010-01-01"),
  cohort_end_date = as.Date("2010-01-05")
)
cohort2 <- tibble(
  cohort_definition_id = c(2, 2, 3, 3, 3),
  subject_id = c(1, 2, 3, 1, 2),
  cohort_start_date = as.Date("2010-01-01"),
  cohort_end_date = as.Date("2010-01-05")
)
cdm <- cdmFromTables(
  tables = list(
    "person" = tibble(
      person_id = c(1, 2, 3), gender_concept_id = 0, year_of_birth = 1990,
      race_concept_id = 0, ethnicity_concept_id = 0
    ),
    "observation_period" = tibble(
      observation_period_id = 1:3, person_id = 1:3,
      observation_period_start_date = as.Date("2000-01-01"),
      observation_period_end_date = as.Date("2023-12-31"),
      period_type_concept_id = 0
    )
  ),
  cdmName = "mock",
  cohortTables = list("cohort1" = cohort1, "cohort2" = cohort2)
)

cdm <- bind(cdm$cohort1, cdm$cohort2, name = "cohort3")
settings(cdm$cohort3)
cdm$cohort3

omopgenerics documentation built on Sept. 30, 2024, 9:16 a.m.